Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39570 533 / 0 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 412 / 2e-142 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT1G12420 61 / 6e-10 ACR8 ACT domain repeat 8 (.1) AT1G76990 55 / 6e-08 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT4G22780 53 / 2e-07 ACR7 ACT domain repeat 7 (.1) AT1G69040 50 / 2e-06 ACR4 ACT domain repeat 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G052900 [exp] 538 / 0 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 536 / 0 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G442600 [exp] 447 / 2e-156 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G228500 [exp] 440 / 2e-153 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 439 / 6e-153 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 436 / 6e-152 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G115600 [exp] 59 / 3e-09 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.007G006500 [exp] 56 / 2e-08 AT5G65890 567 / 0.0 ACT domain repeat 1 (.1.2) Potri.001G327000 [exp] 50 / 2e-06 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004948 [exp] 629 / 0 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 516 / 0 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005447 [exp] 514 / 0 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10001702 [exp] 514 / 0 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10017470 [exp] 441 / 8e-154 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10023921 [exp] 440 / 3e-153 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 436 / 9e-152 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 216 / 2e-67 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10011715 [exp] 50 / 2e-06 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10036827 [exp] 50 / 2e-06 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G237100.1 pacid=42792332 polypeptide=Potri.001G237100.1.p locus=Potri.001G237100 ID=Potri.001G237100.1.v4.1 annot-version=v4.1 ATGGAAGTGCCAAGCGACGACGCTGTTTTGATCGAGAAAGGAAAGAAGGCAGGAGATCCTCACGTGATCACCGTTAATTGTCCCGACAAGACCGGCCTTG CCTGCGATATTTTTCATGTAATTCTTGACTATGGACTTTACATTACCAAAGGAGATGTTTCAACTGATGGGAAATGGTGCTACATAGTACTCTGGGTGGT TCCACACTCACGGTCCATTATAAGATGGACTCATTTGAAGAACAGACTTTTATCTGTATGCCCTTCATGTTCGGTCTCCTTTTACTGGAACCAGCAGCAA TCCAAGTCTTGTCCGGTTTACTTGTTGAAGTTCTTTAGTCTCGACAGGAAAGGATTGCTGCATGATGTTAATCAGGTTTTGTGTGAGCTGGAGCTAACAA TCCAGAGGGTCAAAGTTACTACAACCCCAGATGGCAGAGTCTTGGACCTCTTTTTCGTTACTGATAAACTGGAGCTATTACACACAAAGCAACGACAAGA TGAGACATGTGAACAATTGCATGCTGTACTAGGTGAATCATGTATCAGTTGTGAACTTCGATTGGCAGGGCCCGAGTATGAATGTCTTCAGGGCATGTCT TCTCTTTCTCCTGTTATTGCAGATGAATTATTTCATTGTGAGATATCAGATAAAGAAATCCATTCACGAGCTCTTAGCCCAGATATGATGAAATTGAAAA GGACAGATGTAATGATAGACAATTCACTGAGCCCTGCTCATACGCTGCTTCAAGTGCATTGTGTTGATCACAAGGGTCTTCTTTATGATGTGATGAGAAC TTTAAAAGACTGCAATATACAGATAGCTTATGGTCGATTCTCACTGGTGACCAATGGTCATCGTGATTTAGACCTATTTATTCAGCAAAAGGATGGAAAA AAGATAGTGGATCCTGAGAAGCAAAGTGCCTTGTGTTTTCGTTTGAAGGTTGAAATGCTTCATCCATTACGTGTGGTTATAGCAAACCGAGGACCAGATA CTGAACTTCTAGTTGCTAATCCAGTCGAGCTATCTGGAAAGGGAAGACCCAGAGTATTCTATGATATTACACATGCTCTAAAAGCACTTGGGATCTGCAT ATTTTCGGCTGAAATAGGAAGGTATTCAACCTCTGATCGTGAATGGGAGATATACAGATTTCTTCTCGAGGAGAACTGCGAATTTCAGTTATCAAATATG ATGGCTAGAAATCAGATTGTGGATAAAGTTAGAAGAACACTGATGGGTTGGTGA
AA sequence Show only first row Show all	>Potri.001G237100.1 pacid=42792332 polypeptide=Potri.001G237100.1.p locus=Potri.001G237100 ID=Potri.001G237100.1.v4.1 annot-version=v4.1 MEVPSDDAVLIEKGKKAGDPHVITVNCPDKTGLACDIFHVILDYGLYITKGDVSTDGKWCYIVLWVVPHSRSIIRWTHLKNRLLSVCPSCSVSFYWNQQQ SKSCPVYLLKFFSLDRKGLLHDVNQVLCELELTIQRVKVTTTPDGRVLDLFFVTDKLELLHTKQRQDETCEQLHAVLGESCISCELRLAGPEYECLQGMS SLSPVIADELFHCEISDKEIHSRALSPDMMKLKRTDVMIDNSLSPAHTLLQVHCVDHKGLLYDVMRTLKDCNIQIAYGRFSLVTNGHRDLDLFIQQKDGK KIVDPEKQSALCFRLKVEMLHPLRVVIANRGPDTELLVANPVELSGKGRPRVFYDITHALKALGICIFSAEIGRYSTSDREWEIYRFLLEENCEFQLSNM MARNQIVDKVRRTLMGW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.001G237100 [exp]	0	1
AT1G15780			unknown protein		Potri.003G013300 [exp]	3.00	0.7750
AT1G20460			unknown protein		Potri.002G013000 [exp]	4.47	0.7697
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.015G074900 [exp]	7.34	0.7541
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.003G202500 [exp]	8.36	0.7555
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	14.69	0.7272
AT2G25740			ATP-dependent protease La (LON...		Potri.006G236400 [exp]	15.74	0.7828
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086800 [exp]	18.97	0.7009
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128800 [exp]	19.44	0.6581
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.003G162801 [exp]	26.15	0.7154
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	29.94	0.7237

Compare expression of checked genes

Potri.001G237100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.