Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46440 637 / 0 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 630 / 0 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 628 / 0 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G47650 477 / 1e-168 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 475 / 6e-168 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 469 / 7e-166 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT1G08200 129 / 5e-34 AXS2 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) AT2G27860 125 / 9e-33 AXS1 UDP-D-apiose/UDP-D-xylose synthase 1 (.1) AT1G53500 111 / 1e-26 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G14790 110 / 3e-26 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G207200 [exp] 628 / 0 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 624 / 0 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.014G129200 [exp] 477 / 8e-169 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G204400 [exp] 477 / 1e-168 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 475 / 5e-168 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.016G080500 [exp] 475 / 7e-168 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.009G150600 [exp] 120 / 6e-31 AT1G08200 736 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.004G189900 [exp] 120 / 7e-31 AT1G08200 717 / 0.0 UDP-D-apiose/UDP-D-xylose synthase 2 (.1) Potri.005G053000 [exp] 112 / 5e-28 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040847 [exp] 641 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10005155 [exp] 634 / 0 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005450 [exp] 633 / 0 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001707 [exp] 631 / 0 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005900 [exp] 520 / 0 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001705 [exp] 503 / 0 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10003605 [exp] 488 / 1e-172 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 482 / 2e-170 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 465 / 5e-164 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10015038 [exp] 462 / 3e-163 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.001G237200.4 pacid=42788570 polypeptide=Potri.001G237200.4.p locus=Potri.001G237200 ID=Potri.001G237200.4.v4.1 annot-version=v4.1 ATGGCATCAAACGGAGACCATCAAACAACTGTGAAGCCTGTGAAGCCACCTCCAAGTCCATCTCCATTGCGAAATTCCAAGTTTTCTAAGTCCAATATGA GAATTTTGGTTACTGGAGGAGCTGGATTCATTGGATCTCACTTGGTCGACAAACTAATGGAAAATGAGAAAAATGAGGTTATTGTTGCTGATAACTACTT TACTGGATCTAAAGACAATCTTAGGAAATGGATTGGTCAGCCGAGGTTTGAGCTTATTCGTCATGATGTCACGGAGCCATTGTTGGTTGAGGTCGATCAG ATTTATCATCTTGCATGCCCTGCTTCTCCCATTTTTTATAAATACAATCCTGTAAAGACAATAAAAACAAATGTGATTGGCACGCTGAACATGCTGGGTC TTGCCAAGCGAGTTGGAGCAAGAATCTTGCTTACATCTACTTCAGAGGTATATGGTGATCCACTTGTGCACCCTCAACCTGAGAGCTACTGGGGCAATGT TAATCCAATTGGGGTTCGGAGCTGCTATGATGAGGGGAAGCGTGTGGCTGAGACATTGATGTTTGACTATCATAGGCAACATGGGATAGAAATTCGCATT GCTAGAATTTTCAACACATATGGACCGCGTATGAATATTGATGATGGGCGTGTTGTGAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCATTGACAG TTCAAAAGCCTGGAACTCAAACTCGCAGTTTCTGCTACGTCTCTGACATGGTTGATGGCCTTATTCGCCTCATGGAAGGAGAGAACACTGGACCAATCAA CATTGGAAACCCAGGGGAATTTACCATGACCGAGCTTGCTGAGACAGTGAAGGAGCTTATTAATCCTGGTGTGGAGATAAACATGGTGGAGAATACTCCT GATGATCCAAGACAGAGGAAACCTGACATTACAAAGGCAAAGGCATTGTTGGGATGGGAACCAAAAGTTAAGTTGCGGGATGGCCTTCCCCTCATGGAGG AGGACTTCCGGCTGAGGCTTGGAGTCTCCAAAAAGAAGTGA
AA sequence Show only first row Show all	>Potri.001G237200.4 pacid=42788570 polypeptide=Potri.001G237200.4.p locus=Potri.001G237200 ID=Potri.001G237200.4.v4.1 annot-version=v4.1 MASNGDHQTTVKPVKPPPSPSPLRNSKFSKSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLRKWIGQPRFELIRHDVTEPLLVEVDQ IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRI ARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQKPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMTELAETVKELINPGVEINMVENTP DDPRQRKPDITKAKALLGWEPKVKLRDGLPLMEEDFRLRLGVSKKK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Potri.001G237200 [exp]	0	1
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.004G118600 [exp]	1.00	0.9642
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.008G094300 [exp]	2.44	0.9606
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	3.16	0.9624
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G097100 [exp]	4.89	0.9338
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	6.32	0.9545
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	7.34	0.9516
AT3G58600			Adaptin ear-binding coat-assoc...		Potri.013G117900 [exp]	7.54	0.9308
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	8.00	0.9551	UXS1.1
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	8.48	0.9398
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.014G100400 [exp]	8.77	0.9349

Compare expression of checked genes

Potri.001G237200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.