Plant FIBer expression Database

Potri.001G237300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G28780 785 / 0 unknown protein
AT3G09450 448 / 4e-146 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G028600
[exp]
1322 / 0 AT2G28780 761 / 0.0 unknown protein
Potri.006G082000
[exp]
616 / 0 AT2G28780 555 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005903
[exp]
832 / 0 AT2G28780 720 / 0.0 unknown protein
Lus10040846
[exp]
796 / 0 AT2G28780 680 / 0.0 unknown protein
Lus10024409
[exp]
617 / 0 AT2G28780 528 / 1e-176 unknown protein
Lus10025334
[exp]
528 / 1e-177 AT3G09450 466 / 4e-154 unknown protein
Lus10007010
[exp]
54 / 3e-08 AT2G28780 55 / 3e-09 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0307 FUSC PF13515 FUSC_2 Fusaric acid resistance protein-like
Representative CDS sequence
>Potri.001G237300.1 pacid=42791353 polypeptide=Potri.001G237300.1.p locus=Potri.001G237300 ID=Potri.001G237300.1.v4.1 annot-version=v4.1
ATGCTAGCCACAACAGACCGTGCCCGAGCAGTGTGGCTCCGTTGCCTGGCCTCGGCGTTCAGGACTGCTCTGGCATGTACCATAGTTGGTTGCACCACCC
TTTATGGTCCAGCTGCTGTCCAACACTATATAGCCTTCCCTGCATTCTCTTATGTGACTGTGATACTCATAGTCACTGATGCAACTTTAGGTGACACTCT
TCATGGTTGCTGGCTAGCACTCTATGCCACGATCCAGAGCGTAGGGCCGGCTCTGCTGAGCCTTTGGCTGGTTGGTCCAGGTCGGTTTACAAATGGCACC
ATATCCTTAGCAGTGGCCCTGGCTGCATTTGTGGTGGCATTTCCTGAGGGGACTCATTTGATAGCAAAGCGAATTGCACTGGGTCAGATTGTTATCGTGT
ACGTTATAGCTTTTATCAATGGTGTGGATGCTGAGGCTATTATGCATCCTTTGAATGTAGCCGCTAGTACAGCTATTGGAGTCTTAGCTTGTGTTATTGC
CCTGCTCTTACCATATCCAAGACTGGCTTGTTGGGAGCTGAAACAAGATTGTGGAAAGCTAGCTGAAAACGTTTCCGAGAGGCTGAACCTCTATGTGAAA
GCTTTCTGTGCAGAAGACAATGCATTGGCATTGACATCTATCTCCCAAGCCAAGCCATTGACTATTGCTGGTGCCAAACTTCTCCAGAGTATCAAACGCT
ACCAAGAAAGCGTGAAATGGGAGAGGCTTCCATTGAAGTTTCTGAGAAACTTTTACTTGAATCCGGGAGAGAGATTGCAAGAGCTAGAGATACCATTGAG
AGGGATGGAAATAGCTTTAACCAGTACCAGTTCATTTCCTATAAGAATGCTCGAGGCAGAGACCAAACAAGGTCTAGTTCAACTAGAGGAGCATGTTAGC
CTGACCCTAAAACAGATCAAGAATTGTTTTCCTAGAGATTCTTTTACTGTTCCAGAATCAAATGCAGACAAAATAATCGAGTTCCTTCAAACACTTCAAG
CAACGATCCCAACAAACCATGAAGATTTGCCCTCTTTTTTCTTCTTATTTTGCATGAAACTCCTCCAAAGAAAATCACTGGCGAAACCAATCACCTCCAT
ACAACAAAAAGAATCAAGCACTCCATGTCAAAAGAATGGGTTCTTCAAGAGCATGTGGATGAGCAACTGGTCCACAAGTGTAAACTGCAAAAGGCTTATG
CCAGCATTCAAATGCTCTCTCTCCTTGGGCCTTGCTGTCCTGTTTGGTTTGATATATAGCAAGAAATATAGTTATTGGTCAGGCCTCCCTGTAGCCATTA
GCATGGCTGCCGCAAGGGAGGCGACGTTCAAAGTTGCTAATGTTAAAGCACAAGGGACAGTCTTGGGGACTGTATATGGAGTATTTGGCTGCTTTGTGTT
TGAAAGGTACTTTCCAATAAGGTTTATCTCTCTCCTTCCTTGGTTCGTCGTTATCAGTTTTCTGAGGCACAGCCAGATGTATGGTCAGGCAGGTGGTATT
TCTGCAGTGATTGGAGCTGTAATAATATTGGGCAGGAAAGATTTTGGACCACCAAGCGAATTTGCTATAGCAAGAATTGTGGAAACTTTTATTGGATTAT
CTTGTTCAATCATGGTAGACCTTCTCTTGCAACCCACTAGATCTTGTTCTCTAGCTAAAGTTCAACTTTCTAAATGTTTCGGGACATTGTCTGCTTGCGT
TGGCTCAATGAGCCTTGCAGCCAACAGAAAAACCAACTTGCTAGAGAAACAAAGGAGACTAAAATTGGATGTTAGCGAACTAGGGAAGTTCATTGGAGAA
GCTGAGGTGGAGCCCAACTTCTGGTTTTTGCCTTTTCATAGTGCTTGCTATTGTAAGCTCTTGGCGTCTTTGTCAAAGTTGGTGGATCTCTTCCTTTTTA
GTGCTGATGCAGTGGGACTCCTTGAACAAGAATCACAAAAACTTGGAGCTTCCTGGAAGGAGTCTGTAAATAAACTACATGGTGACGTTGAAATTTTCAA
GGAAATGGCTGGTTCCTTGGTTAAATGTTTTGAGGATGTCACATTGTTGAAATCGCTAACATTTCTTGAAAAGAAACTTGAAAACAAGAACATCTCTTAT
GATCTTGAACTGGGAAAATCTTCAAACTGGAACATTTTTAAAGCTTCCAGTTTAAAAGACGATAAGATAGATAGCATCATCAGCTCTTACCTCCAACATT
CAAAAGAAATTGTAGACAAGTTTCACGCAGCTGATCATGAAGGGGAAAGGGAACTGAAGAGCCAGGTGGTCTTATGCTTGAGTGCTCTAGGTTTTTGCAT
GAGCAACTTAATAAAAGAGACAAGAGAGATTGAGAAGGGAATCATTGAACTTCTTCAATGGGAAAACCCTTCAAAACACATAAATTTGTACGAGATTTCA
TGTAAAATTCATGCTCTAAACAATTGA
AA sequence
>Potri.001G237300.1 pacid=42791353 polypeptide=Potri.001G237300.1.p locus=Potri.001G237300 ID=Potri.001G237300.1.v4.1 annot-version=v4.1
MLATTDRARAVWLRCLASAFRTALACTIVGCTTLYGPAAVQHYIAFPAFSYVTVILIVTDATLGDTLHGCWLALYATIQSVGPALLSLWLVGPGRFTNGT
ISLAVALAAFVVAFPEGTHLIAKRIALGQIVIVYVIAFINGVDAEAIMHPLNVAASTAIGVLACVIALLLPYPRLACWELKQDCGKLAENVSERLNLYVK
AFCAEDNALALTSISQAKPLTIAGAKLLQSIKRYQESVKWERLPLKFLRNFYLNPGERLQELEIPLRGMEIALTSTSSFPIRMLEAETKQGLVQLEEHVS
LTLKQIKNCFPRDSFTVPESNADKIIEFLQTLQATIPTNHEDLPSFFFLFCMKLLQRKSLAKPITSIQQKESSTPCQKNGFFKSMWMSNWSTSVNCKRLM
PAFKCSLSLGLAVLFGLIYSKKYSYWSGLPVAISMAAAREATFKVANVKAQGTVLGTVYGVFGCFVFERYFPIRFISLLPWFVVISFLRHSQMYGQAGGI
SAVIGAVIILGRKDFGPPSEFAIARIVETFIGLSCSIMVDLLLQPTRSCSLAKVQLSKCFGTLSACVGSMSLAANRKTNLLEKQRRLKLDVSELGKFIGE
AEVEPNFWFLPFHSACYCKLLASLSKLVDLFLFSADAVGLLEQESQKLGASWKESVNKLHGDVEIFKEMAGSLVKCFEDVTLLKSLTFLEKKLENKNISY
DLELGKSSNWNIFKASSLKDDKIDSIISSYLQHSKEIVDKFHAADHEGERELKSQVVLCLSALGFCMSNLIKETREIEKGIIELLQWENPSKHINLYEIS
CKIHALNN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G28780 unknown protein Potri.001G237300
[exp]
0 1
AT3G43630 Vacuolar iron transporter (VIT... Potri.002G069400
[exp]
10.24 0.7862
AT5G18170 GDH1 glutamate dehydrogenase 1 (.1) Potri.019G034800
[exp]
10.58 0.7046 Pt-GDH1.1
AT1G20160 ATSBT5.2 Subtilisin-like serine endopep... Potri.002G018600
[exp]
13.26 0.7508 Pt-SSTP.2
AT3G22740 HMT3 homocysteine S-methyltransfera... Potri.008G155900
[exp]
16.61 0.7635 HMT3.1
AT1G03055 unknown protein Potri.005G216400
[exp]
17.83 0.7330
AT4G31330 Protein of unknown function, D... Potri.006G278000
[exp]
20.12 0.7445
AT3G28345 MDR13, ABCB15 multi-drug resistance 13, ATP-... Potri.017G085000
[exp]
22.13 0.7271
AT1G76990 ACR3 ACT domain repeat 3 (.1.2.3.4.... Potri.002G074800
[exp]
23.32 0.7242 Pt-ACR3.1
AT1G21890 nodulin MtN21 /EamA-like trans... Potri.002G085100
[exp]
29.46 0.7088
AT1G59740 Major facilitator superfamily ... Potri.004G229000
[exp]
31.46 0.6893

Potri.001G237300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.