Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46450 447 / 7e-154 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) AT4G34580 47 / 3e-05 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT2G21540 45 / 0.0001 ATSFH3 SEC14-like 3 (.1.2.3) AT4G39180 44 / 0.0002 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 43 / 0.0004 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 42 / 0.0009 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028700 [exp] 685 / 0 AT3G46450 472 / 4e-164 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Potri.007G025900 [exp] 53 / 2e-07 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.009G119400 [exp] 47 / 3e-05 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.007G025800 [exp] 46 / 3e-05 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.004G157600 [exp] 45 / 7e-05 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.002G243000 [exp] 44 / 0.0002 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G123200 [exp] 42 / 0.0004 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040845 [exp] 451 / 9e-156 AT3G46450 453 / 3e-156 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10005452 [exp] 446 / 1e-153 AT3G46450 417 / 2e-142 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10004953 [exp] 372 / 3e-125 AT3G46450 358 / 4e-120 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10016575 [exp] 246 / 3e-76 AT3G46450 242 / 1e-74 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10004952 [exp] 54 / 2e-09 AT3G46450 46 / 1e-07 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1.2) Lus10040432 [exp] 52 / 9e-07 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 49 / 7e-06 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10041779 [exp] 48 / 2e-05 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10028332 [exp] 46 / 5e-05 AT2G18180 657 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 46 / 7e-05 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.001G237400.2 pacid=42792446 polypeptide=Potri.001G237400.2.p locus=Potri.001G237400 ID=Potri.001G237400.2.v4.1 annot-version=v4.1 ATGGGAGATCCTACGCATAAGTCTGTTAGAGATCAAGGGCAAGGGCAAGGGCAGACTGTTGTTTATAAGGGAAAAACAGTTGCCTCTGATCATAAATCAT TTCCTCGGAGTGCTTGCAAGCTTATAGTTTATTCAAGACATGGTACTGGCCCAGTTGGTCAGGTAGCAATATTTTTACTCAAAGTTGCTACCTTAGAGAC AGTACGAAGGGTTTCGAGGTCTAAATGTCCCCAGGTGTGGAATGGTCTTCAGGCTTTGCAACTCCTTTGCTATCCACCTTTTAAGTGGATTCAAAGATGG GCTCCCTTCAAGGGTTTGGTTAAAGGTGTACAGATGTTTTCGAGTCCATTATTAGTCCTTTCAGTTGCAACTGCTATATCCGATCAATCAAACTGCAGCG GTGAAAACTCAAATGGCTCCAATAATTCTCATGAAGCTGATTCAGAAACATCTTCTGAGTCACTGTCTGCACTTTCCTCTTTCGAAACAAGGACTTCTGA CGTGGCCTCTCAAAGTCTAGCATCTGAAATTTGGTTGATACAACTGTACAGGGAGCTAGAAAATCAAGGAATTGCATTACCAGAAAGAATTAATGAGGAC GAGCTCCGTAGATTTTACTCTGCTGCAAATGGGGACTTTTCGTGCTTTTTATTGTCAATAAAGAAGACAATCCGTTGGAGGGAGACTTACAGAATTCTTT CACAACAAGAGCTTGAAAACTGGTCAAATATGGTCTTCTGGCATGGTCTTGATGTGCTGAACCGACCTTGCCTCATTGTGCGGCTTGGTCTAGCTTGCGC CAACTTTCCATCTCATGAGAGAGCTCGCTTCGCTCAAGCCATTATATCTCAGGTAGAGCATGGAATCCTGCATTTAGTTGATGAAGATAGTCCTCAGATT ACCGTTCTCGTGGATTGTGATGGGCTATCACCATTGAAAATACCTATGCAAATGATGAGATCCTGCTCTTCACTTCTGCATGATAACTTCCCCAACCGCC TTGGTCATTTGGTTGTTATACGGCTTCCTCCAGTAGTTCGAGTTATTGCTCAAACCTTTATCCAAGTTCTAAAACCTGTCACAAGGAAGAAGCTGAGAAT TGAAGGGAAAATGTACCACAGGGTTCTCTTGGAGTGCCTTAAGACACTCCCATCATGTCTTGGAGGTAATTGCAGTTGTGAGATATGTTCAGACGTTCGC ATTATGCAGCAGCCACAATCTACAAATGAGATCAGCACAGCCAGTCCATTTTTTAGTGGTGGTGGGGAAGATCTTCCTTCACCACATCTGACTACCCAGG CTGATGTTCATGTTAATGATAACTGGAACCACCTGTTGAGAACTCTTGTAATTGGCATTCTTATGGTGTGGGTTCTTGTAGCTATCCTTGCCGGAATATA TGATCCCGAACGCCATCTCTTTCAGTTTCCTCAAGGAAAAGAGTGA
AA sequence Show only first row Show all	>Potri.001G237400.2 pacid=42792446 polypeptide=Potri.001G237400.2.p locus=Potri.001G237400 ID=Potri.001G237400.2.v4.1 annot-version=v4.1 MGDPTHKSVRDQGQGQGQTVVYKGKTVASDHKSFPRSACKLIVYSRHGTGPVGQVAIFLLKVATLETVRRVSRSKCPQVWNGLQALQLLCYPPFKWIQRW APFKGLVKGVQMFSSPLLVLSVATAISDQSNCSGENSNGSNNSHEADSETSSESLSALSSFETRTSDVASQSLASEIWLIQLYRELENQGIALPERINED ELRRFYSAANGDFSCFLLSIKKTIRWRETYRILSQQELENWSNMVFWHGLDVLNRPCLIVRLGLACANFPSHERARFAQAIISQVEHGILHLVDEDSPQI TVLVDCDGLSPLKIPMQMMRSCSSLLHDNFPNRLGHLVVIRLPPVVRVIAQTFIQVLKPVTRKKLRIEGKMYHRVLLECLKTLPSCLGGNCSCEICSDVR IMQQPQSTNEISTASPFFSGGGEDLPSPHLTTQADVHVNDNWNHLLRTLVIGILMVWVLVAILAGIYDPERHLFQFPQGKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46450			SEC14 cytosolic factor family ...		Potri.001G237400 [exp]	0	1
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.018G062900 [exp]	3.60	0.7599
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Potri.019G087000 [exp]	5.74	0.7400
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	6.32	0.7095
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009900 [exp]	7.48	0.6787
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110100 [exp]	7.61	0.7408
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	16.73	0.6308
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.012G101500 [exp]	20.00	0.6126
AT3G06150			unknown protein		Potri.010G030900 [exp]	20.49	0.6574
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	25.45	0.6972
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	26.45	0.6812

Compare expression of checked genes

Potri.001G237400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.