Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28790 350 / 4e-123 Pathogenesis-related thaumatin superfamily protein (.1) AT5G40020 203 / 3e-65 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 187 / 4e-58 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 184 / 6e-58 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 187 / 8e-58 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G73620 184 / 2e-57 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 181 / 7e-57 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 180 / 3e-56 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT5G24620 184 / 6e-56 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G20030 179 / 2e-55 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028800 [exp] 456 / 3e-165 AT2G28790 370 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132500 [exp] 201 / 2e-63 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 199 / 1e-62 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.017G075500 [exp] 196 / 3e-62 AT5G40020 355 / 1e-124 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 194 / 7e-61 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.005G240900 [exp] 190 / 2e-59 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020400 [exp] 190 / 2e-59 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G047800 [exp] 188 / 2e-59 AT1G73620 379 / 3e-134 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 188 / 1e-58 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040843 [exp] 348 / 4e-122 AT2G28790 322 / 6e-112 Pathogenesis-related thaumatin superfamily protein (.1) Lus10005453 [exp] 346 / 2e-121 AT2G28790 333 / 1e-116 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004954 [exp] 341 / 1e-119 AT2G28790 330 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1) Lus10016572 [exp] 341 / 2e-119 AT2G28790 328 / 3e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10009058 [exp] 191 / 2e-60 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 189 / 3e-59 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10008304 [exp] 188 / 4e-59 AT5G40020 328 / 4e-114 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 187 / 2e-58 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 186 / 9e-58 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 185 / 4e-57 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.001G237600.1 pacid=42791173 polypeptide=Potri.001G237600.1.p locus=Potri.001G237600 ID=Potri.001G237600.1.v4.1 annot-version=v4.1 ATGGCCACCGCCACGCAACTCTTCACTTGTGCTCTCCTTATCTCGTGCACCCTTTTCCATGTTGCTCGCCCAGAGCTCATCATAACCCTAGTCAATAACT GCCACTTTACTATCTACCCAGCAATCCAGCCCAACGCTGGTCACCCCGTCCTCGAGAAGGGAGGCTTCCCTCTCCAAACTCTAACCCACCGCTCCTTCCG TGCACCAGACCAGCTCTGGTCAGGCCGGATCTGGGGCCGCACTGGCTGTGCCCACTCCAACGGAAAGTTCCATTGCGTTACAGGTGATTGCAACAACAGA ATCGAATGCAACGGACTCGGTGGGGCCACCCCTGCCACGCTGGCCCAGATCACTATTCACCACGGCCACAAGGACTTCTCCTCTTATGGAGTGTCCCTTG TTGACGGCTTTAACCTCCCCATGACGGTGACCCCGCACGAAGGAAAAGGGGTGTGCCCTGTGGTGGGTTGCAGAGCCAATCTGCTAGCCACGTGCCCAGA GAAGCTCCAGTTCAGGTCACTGGGCCGTCACGGTCATGTTGCGGGGTGCAAGAGCGGGTGTGAGGCACTTGGAACGGATGAGCTGTGTTGCAGGAACCAT TACAATAGTCCACAGACGTGTAGGGCTTCGACTTTCTCTGAGTTCTTTAAGCATGCTTGTCCTGCCACTTTTACCTATGCTCATGATAGTCCATCGCTCA CGCATGAATGTTCTTCGCCACGTGAACTCAAAGTTATCTTCTGTCACTAG
AA sequence Show only first row Show all	>Potri.001G237600.1 pacid=42791173 polypeptide=Potri.001G237600.1.p locus=Potri.001G237600 ID=Potri.001G237600.1.v4.1 annot-version=v4.1 MATATQLFTCALLISCTLFHVARPELIITLVNNCHFTIYPAIQPNAGHPVLEKGGFPLQTLTHRSFRAPDQLWSGRIWGRTGCAHSNGKFHCVTGDCNNR IECNGLGGATPATLAQITIHHGHKDFSSYGVSLVDGFNLPMTVTPHEGKGVCPVVGCRANLLATCPEKLQFRSLGRHGHVAGCKSGCEALGTDELCCRNH YNSPQTCRASTFSEFFKHACPATFTYAHDSPSLTHECSSPRELKVIFCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28790			Pathogenesis-related thaumatin...		Potri.001G237600 [exp]	0	1
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214800 [exp]	8.83	0.9871	Pt-PRX1.16
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Potri.008G211800 [exp]	11.87	0.9404
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.002G176966 [exp]	13.26	0.9170
					Potri.002G192050 [exp]	13.56	0.9844
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010500 [exp]	19.59	0.9796
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102301 [exp]	22.04	0.9758
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.012G138800 [exp]	22.69	0.9793	CHSL2
					Potri.016G068066 [exp]	24.37	0.9786
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028000 [exp]	28.24	0.9776
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	31.60	0.9773

Compare expression of checked genes

Potri.001G237600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.