Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 92 / 7e-21 unknown protein AT3G11290 79 / 2e-16 unknown protein AT3G11310 57 / 4e-09 unknown protein AT2G19220 50 / 6e-07 unknown protein AT2G24960 49 / 2e-06 unknown protein AT4G02210 42 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G132850 [exp] 542 / 0 AT5G05800 100 / 1e-23 unknown protein Potri.003G006700 [exp] 541 / 0 AT5G05800 99 / 3e-23 unknown protein Potri.014G026000 [exp] 538 / 0 AT5G05800 100 / 2e-23 unknown protein Potri.018G075600 [exp] 535 / 0 AT5G05800 100 / 1e-23 unknown protein Potri.001G402200 [exp] 530 / 0 AT5G05800 100 / 1e-23 unknown protein Potri.001G299100 [exp] 526 / 0 AT5G05800 94 / 3e-21 unknown protein Potri.005G153700 [exp] 516 / 0 AT5G05800 94 / 2e-21 unknown protein Potri.014G091925 [exp] 510 / 0 AT5G05800 93 / 5e-21 unknown protein Potri.007G062850 [exp] 510 / 0 AT5G05800 93 / 5e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016838 [exp] 58 / 7e-10 AT2G24960 71 / 4e-14 unknown protein Lus10025958 [exp] 50 / 8e-07 AT2G24960 102 / 4e-24 unknown protein Lus10002039 [exp] 46 / 2e-05 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 45 / 3e-05 AT5G05800 81 / 7e-17 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G238000.1 pacid=42791017 polypeptide=Potri.001G238000.1.p locus=Potri.001G238000 ID=Potri.001G238000.1.v4.1 annot-version=v4.1 ATGTTGCATATATTTTGTGATATATGCATTAAGGCAATTGATATGGGAATGAGACCTAATACTCATTTCGATAAAACGGGGTGGAAATTTCTCATAACAT CATTCAAAGAACAAACTGGCCATGCATTCACCAAAACACAATTGAAAAACAAATGGGATGGATGCAAAAAGGATTGGAGGATATGGAATAAGCTGATTTC TGAAACTGGTGTTGGCTGGAATAGTGAATTAGGCATAATTTCAGCTAGCGATGAGTGGTGGAAACAAAAAATTCAGGAAATTAGAGGAGCCAAAAAATTC AGACATGTCGGTATTGAGCCGTCTTTGAAGAATAAATTTGATCGAATGTATTCCAACATTGTCGCAACTGGAACATTTGCATGGGCTCTTTCATCAGGTG TACCTGCTGACAGTGATGTTGATCCTGGTACAAGCAATGCCGACATTGCTCATGATGGTTTGGAAGAGGGCAGCGGTGATTCGGAGGAAGATGTGATTCC AAATTTCCAGACTGACATGGTTCGAATGGTTGGAGGGATAAATATGTCTAGCAGCAGCAACACAAAAAGCAGTGGCAAAAGAAAAGAACGAGATCATTAT GATGTGCGAGGTAGAAAGAAGAAAACATCTGGAATTCAGCTGCTGTCAAGGTGCAATCAACTACTTGAGAGTATATCGACTAAGAGTGATTCCACGTTTG TTAATTTGGATCGCGATGGCTGTAGTATTCGCGAGGTGATGGCTGAGCTGCACTCAATTCCTGGAGTTTCAATTGAAGATGAGTTCCACGACTTTGCTAC AGAGTATTTGAGTTTAAGAAGGAAAAGAGAAATGTGGGCTAGTATGGGTGATAAGGAGCAGAAGTTGAGATGGCTGCAATGA
AA sequence Show only first row Show all	>Potri.001G238000.1 pacid=42791017 polypeptide=Potri.001G238000.1.p locus=Potri.001G238000 ID=Potri.001G238000.1.v4.1 annot-version=v4.1 MLHIFCDICIKAIDMGMRPNTHFDKTGWKFLITSFKEQTGHAFTKTQLKNKWDGCKKDWRIWNKLISETGVGWNSELGIISASDEWWKQKIQEIRGAKKF RHVGIEPSLKNKFDRMYSNIVATGTFAWALSSGVPADSDVDPGTSNADIAHDGLEEGSGDSEEDVIPNFQTDMVRMVGGINMSSSSNTKSSGKRKERDHY DVRGRKKKTSGIQLLSRCNQLLESISTKSDSTFVNLDRDGCSIREVMAELHSIPGVSIEDEFHDFATEYLSLRRKREMWASMGDKEQKLRWLQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05800			unknown protein		Potri.001G238000 [exp]	0	1
AT1G16260			Wall-associated kinase family ...		Potri.009G157201 [exp]	1.00	0.9837
					Potri.017G046700 [exp]	5.47	0.9305
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	5.83	0.9105
AT3G11310			unknown protein		Potri.001G182200 [exp]	5.91	0.9394
AT5G05800			unknown protein		Potri.015G012100 [exp]	6.92	0.9601
AT1G05790			lipase class 3 family protein ...		Potri.002G231534 [exp]	7.74	0.9130
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	8.24	0.8899
AT5G05800			unknown protein		Potri.011G094000 [exp]	11.66	0.8604
					Potri.013G148950 [exp]	12.00	0.9116
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Potri.001G254308 [exp]	12.40	0.9200

Compare expression of checked genes

Potri.001G238000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.