Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55370 160 / 7e-47 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT2G28810 160 / 2e-46 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT1G07640 149 / 6e-43 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT2G37590 150 / 1e-42 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G02460 147 / 5e-41 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT5G65590 113 / 7e-29 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 111 / 8e-29 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 108 / 2e-28 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60850 110 / 6e-28 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT3G21270 105 / 3e-27 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G029500 [exp] 410 / 1e-144 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 247 / 3e-80 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.008G055100 [exp] 232 / 3e-74 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.006G084200 [exp] 226 / 2e-72 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.007G058200 [exp] 114 / 5e-29 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G048300 [exp] 112 / 1e-28 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.015G009300 [exp] 111 / 1e-28 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G063800 [exp] 112 / 2e-28 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.011G055600 [exp] 112 / 2e-28 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016566 [exp] 180 / 6e-54 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 170 / 2e-49 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10040836 [exp] 160 / 3e-48 AT2G37590 142 / 2e-41 DNA binding with one finger 2.4 (.1) Lus10029458 [exp] 158 / 2e-45 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10005956 [exp] 153 / 1e-43 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10040305 [exp] 124 / 4e-32 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10042114 [exp] 105 / 4e-28 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 111 / 7e-28 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10025707 [exp] 110 / 1e-27 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10035955 [exp] 110 / 1e-27 AT5G65590 196 / 4e-60 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G238400.2 pacid=42792560 polypeptide=Potri.001G238400.2.p locus=Potri.001G238400 ID=Potri.001G238400.2.v4.1 annot-version=v4.1 ATGGTGTTCTCTTCAGTTCCATTCTATTTAGATCCTCCCAACTGGCAGCAGCAACCAAGTCAACAACGTCCTGGAGCAAGCAATGAAAGCCCCCAGCTTC CACCTCTTCCTCCACCAACTCATGTTGGTGGTAGTGGCACCGCTGGCACAATCAGACCTGGTTCGATGGCTGATCGAGCTCGGTTGGCCAAGATACCTCA GCCTGAGGTAGCTCTAAAGTGCCCAAGGTGTGAATCTACCAACACCAAGTTTTGTTACTTCAATAACTATAACCTCTCTCAGCCCCGCCACTTTTGCAAA ACCTGTCGGCGATACTGGACTAGAGGGGGTGCCCTTAGAAGTGTTCCTGTGGGTGGTGGATGCCGTAGAAACAAGAAAAGAAAAGTCCAAAGTAGCTCAA AGTCTCCAGTTTCGAGTGAAAGGCAAGTGGGTTCAACTTCCAGTTCCACAAGTGCACTTCCATCACAGGTTATTGGTCATTTGCCTCAACAACAATCTCA ATTACCATACATGACCTCACTGCATAACCTGGCTCAATTCGGCGAGGGAAACATTGGGTTAAACTTTGGTGGAATTCAGGGACAGTTGGGATCAACAAGT GGTGCTAGTGGACAGACTGACATGGGCTTTCAGATAGGAAGCAACTCAGGAATGAATAGCAGTGCTATTTTATCAGCTGGAGGAGTGCATCAATTTCCTT TCTTTGAGTTTTCACCCGCAGGTTTATATCCACTTCAAAGTGAGGGTGCTGAAACTCCGATTAGTGTTCATGGGGACAACCAGCTTCAATCTATGACTTC GAGCTCTAGGGTTTCTCAGTTGGCTCCAGTGAAGACAGAAGGAAACCAAGGGTTAAATTTATCGAAGCCATATTTGGGTGCCCCACAAAATAATCAGTAC TATTGGGGTGGAAATACCTGGGCAGATTTATCAGGTCTCAATTCTTCTTCCACTAGCCATCTCTTAAGATAG
AA sequence Show only first row Show all	>Potri.001G238400.2 pacid=42792560 polypeptide=Potri.001G238400.2.p locus=Potri.001G238400 ID=Potri.001G238400.2.v4.1 annot-version=v4.1 MVFSSVPFYLDPPNWQQQPSQQRPGASNESPQLPPLPPPTHVGGSGTAGTIRPGSMADRARLAKIPQPEVALKCPRCESTNTKFCYFNNYNLSQPRHFCK TCRRYWTRGGALRSVPVGGGCRRNKKRKVQSSSKSPVSSERQVGSTSSSTSALPSQVIGHLPQQQSQLPYMTSLHNLAQFGEGNIGLNFGGIQGQLGSTS GASGQTDMGFQIGSNSGMNSSAILSAGGVHQFPFFEFSPAGLYPLQSEGAETPISVHGDNQLQSMTSSSRVSQLAPVKTEGNQGLNLSKPYLGAPQNNQY YWGGNTWADLSGLNSSSTSHLLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.001G238400 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.003G157300 [exp]	2.00	0.9240
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.014G067000 [exp]	2.44	0.9249
AT5G02460	DOF	AtDof5. 1	Dof-type zinc finger DNA-bindi...		Potri.009G029500 [exp]	2.82	0.9146
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	3.46	0.9212
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.008G055100 [exp]	4.24	0.9159
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	5.47	0.9069
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.010G205400 [exp]	6.48	0.9149
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	7.21	0.9179
AT4G16790			hydroxyproline-rich glycoprote...		Potri.003G079900 [exp]	7.41	0.9055
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	8.83	0.9029

Compare expression of checked genes

Potri.001G238400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.