Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46510 912 / 0 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 793 / 0 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 620 / 0 ATPUB14 plant U-box 14 (.1) AT5G42340 472 / 8e-159 PUB15 Plant U-Box 15 (.1) AT1G71020 448 / 7e-150 ARM repeat superfamily protein (.1.2) AT1G23030 445 / 1e-148 PUB11 ARM repeat superfamily protein (.1) AT1G29340 282 / 6e-85 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 271 / 8e-84 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT2G23140 275 / 2e-81 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G01830 246 / 3e-72 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G029600 [exp] 1211 / 0 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 707 / 0 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 690 / 0 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.002G009900 [exp] 542 / 0 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 483 / 2e-163 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 479 / 1e-161 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 463 / 2e-155 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 452 / 2e-151 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 357 / 7e-114 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016565 [exp] 999 / 0 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 999 / 0 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 684 / 0 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10012260 [exp] 496 / 6e-168 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 489 / 2e-165 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10038699 [exp] 469 / 5e-159 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 462 / 6e-155 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 455 / 1e-141 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 381 / 3e-123 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 367 / 5e-118 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.001G238500.1 pacid=42788842 polypeptide=Potri.001G238500.1.p locus=Potri.001G238500 ID=Potri.001G238500.1.v4.1 annot-version=v4.1 ATGGAGGAAGAAGAGAATGGAGGAGGTGAGGTAGTAGATATTTTGATTGAGACAGTGAACAAGATTGCTTCGATCTCAGATTACAGATGTACGGTCAAGA AACAGTATTGCAATCTAGCCAGGAGGTTGAAGTTGTTGATACCAATGTTGGAAGAGATTAGAGACAGCAAAGACTCCATCATCCCTCAACAAACTCTCAA AGCTCTTGTTTTGCTCAAACAAGCTTTGGATTCCGCTAAAGATTTGCTTATATTTGGTTGCGAAGGAAGCAAGATTTACTTGGTCCTAGAGAGGGAACAA ATTATGAATAAATACCATGAGGTGACAGCTAAATTGGAGCAAGCTCTAAGTGGAATTTCCTATGAAGGCCTGGACATATCTGATGAAGTTAAGGAACAGG TTGAGCTTGTCCTTGCTCAATTTAGAAGAGCCAAAGGAAGGGTCGATGCTACCGATGTTGAGCTGTATGAAGATCTCTTGTCCCTTTACAACAAGACCAA TGATTCAGCATCAGATCTTGCTGTCATAAGAAGAATATCTGAAAAATTACAATTGATGGGAATAGTTGACCTTACACAAGAGTCTCTAGCTTTGCATGAG ATGGTTGCTGCTACTGGAGGAGATCCTGGGGAGAGCATTGAGAAGATGTCGATGCTTTTGAAGAAAATTAAAGATTTTGTGCAAACAGAAAACCCAAACC TGGATGCACCTGAAAGAGAAAAGAATCTTCCCCCAAGTGGCAGTGGACTTGTTGATGGAAGTCACCAGATGCCAGTTATACCAGATGATTTCCGCTGTCC AATATCCCTGGAATTGATGAAGGATCCTGTAATTGTTTCAACAGGGCAGACCTATGAACGTTCCTGCATTGAGAAATGGCTGGGAGCAGGACATGACACT TGTCCAAAGACGCAACAGAAACTCACTAGTACTGCTCCGACACCCAACTACGTTCTACGAAGCCTCATAGCGCAGTGGTGTGAAGCCAATGGCATTGAGC CACCAAAAAGGCCCAGCAGTTCTGGGACAAGTAAAACTGTATCTACTTGCTCACTTGCTGAGCGTACAAAGATTGAAATTCTCCTCCACAAGCTTACATC TGGCTGCCTAGAAGACCAGCGGTCTGCTGCTGGGGAGATCCGTCTTCTTGCCAAGCACAACGCTGATAATCGTGTGGCTATTGCTCAAGCTGGTGCAATC CCTCTCCTTGTTGGCCTCCTCTCTACACCTGACCCTCGCATCCAAGAGCATGCAATTACAGCACTTCTTAACCTCTCCATATGCGAAGATAACAAAGGAA GCATTGTATCAGCTGGGGCAGTTCCTGGTATTGTGCATGTGCTCAAGAAGGGCAGCATGGAAGCTCGAGAAAATGCTGCAGCCACCCTTTTCAGCCTTTC AGTTGTGGATGAAAATAAGGTTACAATTGGTTTTCTGGGGGCTATCCCACCTCTGGTGACACTTCTAAGTGAAGGTACACAAAGGGGGAAGAAGGATGCA GCGACTGCACTTTTCAACTTGTGCATCTACCAGGGGAACAAGGGAAAGGCAGTGAGGGCCGGAGTTGTGCCCACATTGATGTGTCTATTAACAGAAACCG GAGGTGGAATGGTGGATGAGGCACTGGCTATACTAGCAATACTGGCTAGCCACCCTGAAGGGAAGGCAACCATTGGAGCTGCAGAGGCAGTGCCAGTTTT GGTGGAAGTTATCAGGAATGGGTCACCCAGGAACAGAGAGAATGCAGCAGCAGTGTTGGTGCATCTTTGTTCTGGAGACCAGAAACATATGGTAGAGGCA CAAGAACATGGAGTTATGGGACCGCTGGTGGATTTGGCACAAAATGGCACAGACCGGGGAAAGAGGAAGGCTCAACAGTTGCTTGAGCGTATAAGCAGAT TTGTTGAGCAACAAAATCACTCTCAGGCACAAACTGAGGCTCATATCCAGCAGCCTCAGCCATCCTCCATGGCTAATTTTGGTGATAGCTGA
AA sequence Show only first row Show all	>Potri.001G238500.1 pacid=42788842 polypeptide=Potri.001G238500.1.p locus=Potri.001G238500 ID=Potri.001G238500.1.v4.1 annot-version=v4.1 MEEEENGGGEVVDILIETVNKIASISDYRCTVKKQYCNLARRLKLLIPMLEEIRDSKDSIIPQQTLKALVLLKQALDSAKDLLIFGCEGSKIYLVLEREQ IMNKYHEVTAKLEQALSGISYEGLDISDEVKEQVELVLAQFRRAKGRVDATDVELYEDLLSLYNKTNDSASDLAVIRRISEKLQLMGIVDLTQESLALHE MVAATGGDPGESIEKMSMLLKKIKDFVQTENPNLDAPEREKNLPPSGSGLVDGSHQMPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLGAGHDT CPKTQQKLTSTAPTPNYVLRSLIAQWCEANGIEPPKRPSSSGTSKTVSTCSLAERTKIEILLHKLTSGCLEDQRSAAGEIRLLAKHNADNRVAIAQAGAI PLLVGLLSTPDPRIQEHAITALLNLSICEDNKGSIVSAGAVPGIVHVLKKGSMEARENAAATLFSLSVVDENKVTIGFLGAIPPLVTLLSEGTQRGKKDA ATALFNLCIYQGNKGKAVRAGVVPTLMCLLTETGGGMVDEALAILAILASHPEGKATIGAAEAVPVLVEVIRNGSPRNRENAAAVLVHLCSGDQKHMVEA QEHGVMGPLVDLAQNGTDRGKRKAQQLLERISRFVEQQNHSQAQTEAHIQQPQPSSMANFGDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G238500 [exp]	0	1
AT1G79990			structural molecules (.1.2.3.4...		Potri.003G056100 [exp]	20.04	0.8387
AT1G53400			Ubiquitin domain-containing pr...		Potri.001G387400 [exp]	22.44	0.8132
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Potri.001G126000 [exp]	27.34	0.7510
					Potri.002G146675 [exp]	33.98	0.7413
AT1G65020			unknown protein		Potri.013G079201 [exp]	36.49	0.8354
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	43.87	0.8345
AT1G05170			Galactosyltransferase family p...		Potri.014G153700 [exp]	66.93	0.8195
AT3G22970			Protein of unknown function (D...		Potri.005G216900 [exp]	72.51	0.8116
AT1G77280			Protein kinase protein with ad...		Potri.005G182800 [exp]	75.76	0.8133
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.001G104600 [exp]	78.21	0.8114

Compare expression of checked genes

Potri.001G238500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.