Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28840 657 / 0 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G57740 144 / 6e-38 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G07270 143 / 1e-37 XBAT33 XB3 ortholog 3 in Arabidopsis thaliana (.1) AT5G60070 81 / 3e-16 ankyrin repeat family protein (.1) AT3G12360 72 / 2e-13 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G02620 70 / 1e-12 ATANK1, ANK1 ankyrin-like1 (.1) AT1G07710 69 / 2e-12 Ankyrin repeat family protein (.1) AT2G31820 67 / 1e-11 Ankyrin repeat family protein (.1) AT5G40160 66 / 1e-11 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G13530 66 / 3e-11 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030000 [exp] 812 / 0 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.015G141400 [exp] 150 / 3e-40 AT5G07270 795 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.006G176600 [exp] 142 / 2e-37 AT5G57740 597 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.018G098400 [exp] 142 / 3e-37 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Potri.012G139100 [exp] 135 / 8e-35 AT5G07270 782 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Potri.006G223800 [exp] 74 / 7e-14 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 74 / 9e-14 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G223700 [exp] 72 / 2e-13 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.014G051100 [exp] 70 / 1e-12 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016561 [exp] 696 / 0 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10040829 [exp] 583 / 0 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10005754 [exp] 144 / 1e-37 AT5G07270 753 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10027441 [exp] 135 / 9e-35 AT5G07270 719 / 0.0 XB3 ortholog 3 in Arabidopsis thaliana (.1) Lus10019974 [exp] 131 / 4e-33 AT5G57740 630 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10015503 [exp] 131 / 7e-33 AT5G57740 614 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1) Lus10015224 [exp] 73 / 2e-13 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 70 / 1e-12 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10002621 [exp] 69 / 3e-12 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10003986 [exp] 67 / 2e-11 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.001G238800.1 pacid=42792347 polypeptide=Potri.001G238800.1.p locus=Potri.001G238800 ID=Potri.001G238800.1.v4.1 annot-version=v4.1 ATGGGCCAGGGACTGAGTTGTGCAGCGAGTCAAGATCATAGGTTCTTCTCTGCTGTGCATTTCGGTGACTTGGACACTGTAAATGCTATGCTTGAGAGAG ACCCATCTCTGCTTTATCAAACTACTTATGATCGCCAGTATCCGCTTCATATTGCTGCTGCCAATGGCCAGATCGAGATTTTATCAATGCTTCTGGAGCG ATCTGTGGATCCTGATATGGTGAATCGTCAGAAGCAGACTCCGCTTATGTTGGCTGCAATGCATGGCAAAATCTCATGTGTGAAGAAGCTCGTCGAAGCA GGAGCAAATATGTTGAAGTTTGATTCACTTAATGGAAGAACTTGCTTGCACTTTGCTGCTTACTATGGCCATTCTGATTGCCTTCAAGCTATTCTTTCTG CTGTTCAATCCAGCCCTGTTGCTGTTTCTTGGGGATATACGCGGTTTGTCAATATTAGAGACGGTAGAGGAGCAACACCATTGCATTTAGCAGCCCGTCA AAGGCGGCCTGAATGTGTACATATCTTGTTAGACAATGGTGCTCTTGTTTGTTCTTCAACAGGCGGATATGGCTCCCCGGGGACCACTCCTCTTCATTTG GCTGCCAGAGGAGGATCTCTTGATTGTATTCGTGAATTGCTGGCATGGGGTGCAGATCGTATGCAAAGAGATGCATCTGGGAGAATACCTTATGTAGTTG CTTTGAAGTACAGAAATGGAACATGTGCAGCTCTTCTCAATCCTTCGTCAGCAGAGCCTCTTGTCTGGCCGTCACCGTTGAAGTTCATCAGTGAGCTGAA TCAAGAGGCAAAAGCTCTGCTAGAGTGTGCCTTGATGGAGGCCAACAGGGAGAGGGAAAAGAACATCTTGAAGGGAACGGGGTACTCTCTTCCATCTCCA TCACATTCTGATGATGGGACAGATGACAATATATCTGAGGCAAGCGATACAGAGTTGTGCTGCATATGCTTTGAGCAGGTTTGTACAATTGAAGTCGAAG ACTGTGGCCATCAGATGTGTGCACAATGCACACTGGCCCTCTGCTGCCATAACAAACCCAACCCTACAACCGCATGCCTTACCCCTCCAGTTTGCCCATT CTGTCGTAGCACCATTGCCCGCCTAGTGGTTGCTAAGATGAAGGATTGCAATGATGCTGATCAGGACATTGGGGACGTTGGTTCCCCAAAGCTGAGAAAG TCCAGGAGGTCACTGAACTTCAGTGAGGGAAGCAGCAGCTTCAAGGGCTTATCAGCAACATTTGGAAAAATGGGTGGCCGTGGCTCAGGAAGGATTGCTG CAGAAAATGAGTGGGTGGATAAGCCTTGA
AA sequence Show only first row Show all	>Potri.001G238800.1 pacid=42792347 polypeptide=Potri.001G238800.1.p locus=Potri.001G238800 ID=Potri.001G238800.1.v4.1 annot-version=v4.1 MGQGLSCAASQDHRFFSAVHFGDLDTVNAMLERDPSLLYQTTYDRQYPLHIAAANGQIEILSMLLERSVDPDMVNRQKQTPLMLAAMHGKISCVKKLVEA GANMLKFDSLNGRTCLHFAAYYGHSDCLQAILSAVQSSPVAVSWGYTRFVNIRDGRGATPLHLAARQRRPECVHILLDNGALVCSSTGGYGSPGTTPLHL AARGGSLDCIRELLAWGADRMQRDASGRIPYVVALKYRNGTCAALLNPSSAEPLVWPSPLKFISELNQEAKALLECALMEANREREKNILKGTGYSLPSP SHSDDGTDDNISEASDTELCCICFEQVCTIEVEDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIARLVVAKMKDCNDADQDIGDVGSPKLRK SRRSLNFSEGSSSFKGLSATFGKMGGRGSGRIAAENEWVDKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Potri.001G238800 [exp]	0	1
AT3G58710	WRKY	ATWRKY69, WRKY6...	RABIDOPSIS THALIANA WRKY DNA-B...		Potri.014G119800 [exp]	6.78	0.7427
AT4G00755			F-box family protein (.1.2)		Potri.002G153900 [exp]	28.14	0.7086
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.005G194900 [exp]	30.65	0.7225
					Potri.014G135550 [exp]	31.62	0.6593
AT1G55200			Protein kinase protein with ad...		Potri.002G130300 [exp]	70.14	0.6722
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036500 [exp]	70.35	0.6235
AT2G34930			disease resistance family prot...		Potri.001G027500 [exp]	89.83	0.6097
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G031700 [exp]	107.71	0.6077	Pt-NHX2.2
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.005G077600 [exp]	139.66	0.6198
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.018G137000 [exp]	165.11	0.6333

Compare expression of checked genes

Potri.001G238800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.