Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02440 80 / 9e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030100 [exp] 291 / 5e-101 AT5G02440 98 / 1e-25 unknown protein Potri.006G084400 [exp] 159 / 4e-49 AT5G02440 78 / 5e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023770 [exp] 105 / 4e-28 AT5G02440 97 / 2e-25 unknown protein Lus10024400 [exp] 105 / 5e-28 AT5G02440 88 / 1e-21 unknown protein Lus10025345 [exp] 90 / 5e-22 AT5G02440 67 / 6e-14 unknown protein Lus10040828 [exp] 70 / 1e-14 AT5G02440 66 / 1e-13 unknown protein Lus10016560 [exp] 69 / 3e-14 AT5G02440 66 / 2e-13 unknown protein Lus10000246 [exp] 38 / 0.0008 AT5G02440 47 / 1e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G238900.1 pacid=42789565 polypeptide=Potri.001G238900.1.p locus=Potri.001G238900 ID=Potri.001G238900.1.v4.1 annot-version=v4.1 ATGGCTCGGCAGGAAGAAGGTTGGCCTCTGGGTTTGCAGCCCCTGAATGCAAGAGTTGGGATAGCTAGAAATGGTGATTTCTCTGGATCAAGATCATTTA ACACTTTAATCACTGGTTCTCCAACTTCTTCAACAGATTCTTCGTCAGATCTAGACACCGAGTCTACAGGGTCTTTCTTCCATGACAAGAGCATTACGCT GGGGAGCCTTATAGGTGTTTCTAACATACTAGAGCTCTCAAGAAAATCAACAAGGACAAGGAAAGTTGAAGTAGTAGAGGAGAAGAAGAGTTGCAAATCC AAAACATGGATTTTCTCTTTATGTTCAAGAGACACCACTGATGCCAGAATTGTGAATAATACTCCGTCTCTCGGCCATTTTCTTGCTGTGGAGAGAAGAG CAGCTGATGAATTTAGAAGGAATCACGGCCCTTTTATTCATGGAACTCATGACGAGCTTGAACTTGCTCAGCCTGTTACAGAACCCAACTCTCTATTTGT TAATGGCCATGTTGCTCCTCCTACACTAAATCAAAGCTGCGGTGCCGGAGCTGAAAGGAGCGGAAATGAAGAATTGGAGCACTGTAGTGGTTATGGAGTA CCAGTTCTATTTTCATGCATGTGTGGACAACCCTCTCTTTGA
AA sequence Show only first row Show all	>Potri.001G238900.1 pacid=42789565 polypeptide=Potri.001G238900.1.p locus=Potri.001G238900 ID=Potri.001G238900.1.v4.1 annot-version=v4.1 MARQEEGWPLGLQPLNARVGIARNGDFSGSRSFNTLITGSPTSSTDSSSDLDTESTGSFFHDKSITLGSLIGVSNILELSRKSTRTRKVEVVEEKKSCKS KTWIFSLCSRDTTDARIVNNTPSLGHFLAVERRAADEFRRNHGPFIHGTHDELELAQPVTEPNSLFVNGHVAPPTLNQSCGAGAERSGNEELEHCSGYGV PVLFSCMCGQPSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02440			unknown protein		Potri.001G238900 [exp]	0	1
AT4G38670			Pathogenesis-related thaumatin...		Potri.009G132200 [exp]	1.00	0.8890
AT2G23530			Zinc-finger domain of monoamin...		Potri.009G108400 [exp]	2.00	0.8743
AT3G55390			Uncharacterised protein family...		Potri.010G207000 [exp]	4.00	0.7965
					Potri.012G073800 [exp]	4.24	0.8228
AT2G17990			unknown protein		Potri.007G012600 [exp]	4.79	0.7795
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	5.74	0.8538
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	6.00	0.8360
AT3G19660			unknown protein		Potri.004G105900 [exp]	6.00	0.8380
AT3G62100	AUX_IAA	IAA30	indole-3-acetic acid inducible...		Potri.002G186400 [exp]	7.48	0.8240	IAA4.1
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.004G172600 [exp]	7.74	0.8186	Pt-GRP2.3

Compare expression of checked genes

Potri.001G238900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.