Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 474 / 3e-156 U-box domain-containing protein kinase family protein (.1) AT5G57035 333 / 6e-103 U-box domain-containing protein kinase family protein (.1) AT3G49060 318 / 4e-97 U-box domain-containing protein kinase family protein (.1.2) AT2G19410 317 / 2e-96 U-box domain-containing protein kinase family protein (.1) AT5G51270 306 / 1e-92 U-box domain-containing protein kinase family protein (.1) AT4G25160 296 / 8e-89 U-box domain-containing protein kinase family protein (.1) AT5G61560 295 / 1e-88 U-box domain-containing protein kinase family protein (.1.2) AT5G61550 296 / 2e-88 U-box domain-containing protein kinase family protein (.1.2) AT1G72760 260 / 2e-76 Protein kinase superfamily protein (.1) AT5G26150 260 / 3e-76 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030400 [exp] 939 / 0 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 511 / 6e-172 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 415 / 6e-133 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 389 / 6e-123 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 337 / 2e-104 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.006G147000 [exp] 301 / 2e-91 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 293 / 1e-87 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G061600 [exp] 269 / 4e-79 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 258 / 3e-75 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016557 [exp] 929 / 0 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 732 / 0 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10036363 [exp] 452 / 3e-149 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 411 / 3e-131 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 407 / 1e-129 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10039245 [exp] 326 / 2e-99 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10027490 [exp] 321 / 1e-98 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10018835 [exp] 302 / 4e-91 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10036359 [exp] 300 / 3e-90 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10026439 [exp] 270 / 4e-81 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G239100.2 pacid=42791676 polypeptide=Potri.001G239100.2.p locus=Potri.001G239100 ID=Potri.001G239100.2.v4.1 annot-version=v4.1 ATGTTGAGCTCTCAGTTGCCGGACATTGCGGAAGCAAGTAGCAGCGAAAGAGTTTATGTGGCTTTAGGGAATTCTATAGAGAAAGCTGTGAGCTTGCTCA ACTGGGTTTTCGAAAGCTTGGGAACCAGACAAATTTGTTTACTTCACGTTCACCGTCCTTCTCCTCTGATACCTACTCTCTTGGGGAAGCTTCCAGCTAG TCAAGCAAATGCTGAAGTAGTGTCCGCATTTAGAAGGGAGGAGAATGAACGGACGAAGAAACTTTTTGATTATTACTTGATCATTTGTCGTAGAGCAAAG GTTGAAGCAACTATTGTTACACTTGAAAGTGACCAAGTTCACAAGGGAATTGTAGAATTGGTGAACAGACATGGTGTCAGGAAGCTTGTTATGGGGGCTG TAAAAGAAAATTGTATGAAGGTCAAAAAGAGCTCCTGCAAAGAAAACTATGCTGCGAAACATGCTCCCTTGTTCTGTGAGATATGGTTTATCAACAAAGG GAAATGTATATGGACAAGAGAAGCTTCTGAAAATTCAAATCTTCTTCAGGGTTCATTTAGTTCAACAAGTAGCAGCTGTGCTTCAGGATGCACTTCCACT GCAATGAGAGTGTCTTCAGGTTCTGATCCAAAAGTGGAGGAAGAAAGCTCATATTCTCACATTGAAGAAGTGAGTTTAGAAGCAGAAGCTTTGGGCAATG AAGCATTTGAAGAGTTGTTGAAGTGCAAAACGTTGGAACTGGAAGCAATGGAAGCTTTCAGCAAGGTCAAAATCTATGAATCTACCCTTGTACATGAAGT TAAACTTAGAAAAGAAGCTGAAGATGCACTCAATAATACAATACAGGATCAAGAAAAGCTATTGAAAGAGAAAGATGAAGTAGCTAGAAAGCTAGAGAGA ACCATGAGAAATGTTGCTCTTCTAGACATTCGTGCACAGGAAGCAAATCACAGGTGTGAGGAAGCTTCTGGAGAATTAAAACTCATTCAAACATCCATTT TGTCTCTGCGGCAGGAAGAGCAGAGGATCCGACGGCAGAAAATGGAAGCTGTGCATTGGCTTGAGCGGTGGAGAAGCCCTGGGCAAGCAGGAACTGCAAA CTGCAATGGTTTTCTTGGAATCACTGAAGAGTTGCCTGAATTAGCAGAATTTTCTTTGTCTGATTTGCAAACTGCTACGTGCAACTTCTCTGAGAGCTTC AAGCTTGGTCAGGGAGGTTGTGGTCAAGTTTACAAGGGTGAAATGTTGGGTAGAACTGTTGCTATAAAGAGGCTGCATCCAAATAACATGCAAGGGCAAT CAGAGTTTCAAAAGGAGGTCCAAGTTCTTGGCAAACTACAGCATCCTCATCTGGTGACTCTGCTTGGTGCGTGTCCAGAAGCATGGTCTCTTGTGTATGA GTACTTGCCCAATGGGAGCCTCCAAGACCGCCTTTTCCAGAAAAACAACATTGCCCCCTTGACATGGAAGATTCGAACACGTATTATTGCTGAAATCTCA AGTGCCCTTTGCTTCTTGCACTCTTCCAAACCTGAAAAGATTGTCCATGGTGATCTGAAACCACAAAACATCCTGCTAAATTCTGAACTTAGCTGCAAGA TATGTGAGTTTGGAATTTGCAGGTTGGTAACAGAGGATAGTCTTTATCAGCCAAGTTTTCATTGGAGCACTATTCCAAAGGGTTCCTTTCCATATACAGA TCCAGAGTTCCAAAGAATTGGAGTCTTGACACCGAAGTCTGACATCTATGCCTTTGGAGTAATCATTCTACAGCTACTCACCGGTAAGCCTCCTGCTGGA TTGGTAGGTGAGGTGCGTAGAACAAGGAAATTAACCTCAATTTTGGATCCATCAGCTGAATGGCCAATGATTGTGGCAAGGCGATTAGTGGATTTGGCCT TGCAGTTCTGTGAATTGAGCAGTAGGGGTAGACCAGACCTAACACCTACACTGGTAAGGGAATTGGAACATCTGCATGTTTCAGAGGAGAGGCCGGTGCC ATCTTTCTTCTTGTGCCCTATTCTTCAGGAAATAATGCACGACCCTCAGGTGGCAGCTGATGGGTTCACGTATGAAGGAGAAGCCTTGCGTGGATGGCTG GCAAATGGCCGTGAAACATCTCCAATGACCAATCTGAGATTAGATCACTTGCATCTCACTCCCAACCATGCATTGCGTCTTGCCATTCAAGACTGGCTTT GTAAATATTAG
AA sequence Show only first row Show all	>Potri.001G239100.2 pacid=42791676 polypeptide=Potri.001G239100.2.p locus=Potri.001G239100 ID=Potri.001G239100.2.v4.1 annot-version=v4.1 MLSSQLPDIAEASSSERVYVALGNSIEKAVSLLNWVFESLGTRQICLLHVHRPSPLIPTLLGKLPASQANAEVVSAFRREENERTKKLFDYYLIICRRAK VEATIVTLESDQVHKGIVELVNRHGVRKLVMGAVKENCMKVKKSSCKENYAAKHAPLFCEIWFINKGKCIWTREASENSNLLQGSFSSTSSSCASGCTST AMRVSSGSDPKVEEESSYSHIEEVSLEAEALGNEAFEELLKCKTLELEAMEAFSKVKIYESTLVHEVKLRKEAEDALNNTIQDQEKLLKEKDEVARKLER TMRNVALLDIRAQEANHRCEEASGELKLIQTSILSLRQEEQRIRRQKMEAVHWLERWRSPGQAGTANCNGFLGITEELPELAEFSLSDLQTATCNFSESF KLGQGGCGQVYKGEMLGRTVAIKRLHPNNMQGQSEFQKEVQVLGKLQHPHLVTLLGACPEAWSLVYEYLPNGSLQDRLFQKNNIAPLTWKIRTRIIAEIS SALCFLHSSKPEKIVHGDLKPQNILLNSELSCKICEFGICRLVTEDSLYQPSFHWSTIPKGSFPYTDPEFQRIGVLTPKSDIYAFGVIILQLLTGKPPAG LVGEVRRTRKLTSILDPSAEWPMIVARRLVDLALQFCELSSRGRPDLTPTLVRELEHLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWL ANGRETSPMTNLRLDHLHLTPNHALRLAIQDWLCKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.003G055600 [exp]	5.91	0.7740
AT5G57035			U-box domain-containing protei...		Potri.006G147000 [exp]	7.41	0.7798
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028400 [exp]	10.04	0.8029
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	11.18	0.7352
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	12.08	0.8026
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	12.24	0.7871
AT2G33580			Protein kinase superfamily pro...		Potri.005G259600 [exp]	18.97	0.7590
AT3G18620			DHHC-type zinc finger family p...		Potri.007G070600 [exp]	20.49	0.7065
AT1G34320			Protein of unknown function (D...		Potri.013G115300 [exp]	25.37	0.7328
AT4G36550			ARM repeat superfamily protein...		Potri.005G122100 [exp]	29.39	0.7297

Compare expression of checked genes

Potri.001G239100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.