Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) AT3G23350 155 / 4e-45 ENTH/VHS family protein (.1) AT1G08670 151 / 4e-44 ENTH/VHS family protein (.1) AT2G43160 67 / 5e-12 ENTH/VHS family protein (.1.2.3.4) AT3G59290 62 / 3e-10 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030500 [exp] 474 / 1e-169 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 227 / 5e-73 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 129 / 1e-35 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.002G231100 [exp] 71 / 2e-13 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.014G151300 [exp] 68 / 2e-12 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 58 / 3e-09 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040824 [exp] 299 / 1e-100 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 290 / 5e-97 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 194 / 2e-60 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10021173 [exp] 170 / 1e-49 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 167 / 1e-48 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10005164 [exp] 156 / 4e-43 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10023415 [exp] 122 / 3e-33 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10026741 [exp] 66 / 1e-11 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10025527 [exp] 65 / 2e-11 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10007460 [exp] 59 / 3e-09 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF01417 [poplar] [flax] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Potri.001G239200.4 pacid=42788724 polypeptide=Potri.001G239200.4.p locus=Potri.001G239200 ID=Potri.001G239200.4.v4.1 annot-version=v4.1 ATGTTTATCTTAAGCAAAGGCAATACCAGCAGCAACGTGGGTACACCATCATTCCATGAACTTAAGAAGCAAGCTTCTTTCTTCTTCAAGGAAAAGATTA AGAGTGCTAGACTAGCTCTCACTGATGTCACACCGGCAGAACTGTTGACTGAAGAAGTTACAAGTGGGAATCCATGGGCACCAGACAACCCTGCCCTTGG ATCCATTTCAAGGGCTGCTTTTGAAGTCGATGATTTTTGGAGAATTGTGGAGATTCTACACAAGAGATTCTCGAGATTTGAGAGAAAGAACTGGAGGTCC TCTTACAATTCCCTTATTGTACTTGAACACTTGTTGACTCATGGACCAGAGAGTGTGGCAGGGGAGTTTCAGATTGACCAAGATGTTCTTAGGGAGATGG AAAGCTTTCAGTGTATAGATGAAAAAGGATTCAACTGGGGTCTCGCTGTTCGAAAGAAATCAGAGAGTATCTTGAAGCTGCTTGAAGAAGGACCTCTTCT CAAAGAAGAGAGAGAGCGAGCTAGAAAGGTGACTAGAGAGATTCAGGGATTTGGGAGCTTATGCCACAGGTTTTCATCAGCGCAAGGCATTCTACAGGAA TCATCTAACGGAACATTTGCAAGAAGTAATTCTCAGTTCAACGATTCCTGGGAAAATCAATTCTTATCCCCGAAAGAAGAAATTTTGATCCAAACAGTGC AACACAAGGACACAAATTCCGAGTCTGCCAAGAAAAGGGCGAATCTGGATTCTTGGGAAAGTACCGTCAACGTTTGCCAAATGCCCGAGAAACCTGGAAC AAGTCTCAAAGAAAACTTGGTTCCTAAGAAGGAAGAATTACATCGATGGAACGGCACAGGAGAGGGAAATCCCCTTTTGGTTGGCAGGAGAGATGAACCA AGGATTATAGAGGAAAACCACCCCTTTAGTGACGCCGAGAACCAAACCACTGCTTCCCTCCTTTGA
AA sequence Show only first row Show all	>Potri.001G239200.4 pacid=42788724 polypeptide=Potri.001G239200.4.p locus=Potri.001G239200 ID=Potri.001G239200.4.v4.1 annot-version=v4.1 MFILSKGNTSSNVGTPSFHELKKQASFFFKEKIKSARLALTDVTPAELLTEEVTSGNPWAPDNPALGSISRAAFEVDDFWRIVEILHKRFSRFERKNWRS SYNSLIVLEHLLTHGPESVAGEFQIDQDVLREMESFQCIDEKGFNWGLAVRKKSESILKLLEEGPLLKEERERARKVTREIQGFGSLCHRFSSAQGILQE SSNGTFARSNSQFNDSWENQFLSPKEEILIQTVQHKDTNSESAKKRANLDSWESTVNVCQMPEKPGTSLKENLVPKKEELHRWNGTGEGNPLLVGRRDEP RIIEENHPFSDAENQTTASLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46540			ENTH/VHS family protein (.1)		Potri.001G239200 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	1.73	0.9383
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Potri.010G092900 [exp]	2.82	0.9361
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231200 [exp]	3.16	0.9297
AT5G18130			unknown protein		Potri.019G035600 [exp]	4.89	0.9307
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.009G139600 [exp]	5.19	0.9313
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	8.94	0.9243
AT3G49160			pyruvate kinase family protein...		Potri.012G002500 [exp]	9.16	0.9064
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	12.00	0.9253
AT3G05970		LACS6, ATLACS6	long-chain acyl-CoA synthetase...		Potri.010G090200 [exp]	13.22	0.9083	Pt-LACS6.1
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.007G133400 [exp]	14.31	0.8990

Compare expression of checked genes

Potri.001G239200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.