Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28890 862 / 0 PLL4 poltergeist like 4 (.1) AT5G02400 590 / 0 PLL2 pol-like 2 (.1) AT3G09400 548 / 0 PLL3 pol-like 3 (.1.2) AT1G07630 526 / 5e-179 PLL5 pol-like 5 (.1) AT2G46920 342 / 1e-105 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 337 / 2e-104 PLL1 poltergeist like 1 (.1) AT3G16560 205 / 4e-58 Protein phosphatase 2C family protein (.1) AT3G12620 138 / 2e-35 Protein phosphatase 2C family protein (.1.2) AT3G51370 135 / 5e-35 Protein phosphatase 2C family protein (.1.2) AT3G55050 135 / 2e-34 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030600 [exp] 1274 / 0 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.006G085000 [exp] 656 / 0 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.003G089500 [exp] 367 / 9e-116 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 362 / 4e-114 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 359 / 1e-111 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 355 / 6e-110 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G159600 [exp] 207 / 1e-58 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 204 / 2e-57 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 200 / 4e-56 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040823 [exp] 978 / 0 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 973 / 0 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 416 / 2e-136 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 412 / 6e-135 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10004554 [exp] 365 / 1e-114 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10000896 [exp] 362 / 3e-114 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004793 [exp] 206 / 3e-58 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 204 / 1e-57 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10004170 [exp] 138 / 3e-35 AT5G06750 518 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10021056 [exp] 137 / 6e-35 AT5G06750 515 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.001G239300.1 pacid=42792659 polypeptide=Potri.001G239300.1.p locus=Potri.001G239300 ID=Potri.001G239300.1.v4.1 annot-version=v4.1 ATGGGAAACGGTTTTGGTAAACTGACGGTCTGTTTCACGGGAGATGGAGAGGCTCGCCGGAGAAAGGTACTCTCGGAACTAATATCCGACCCATTAGATG AAGGTCTAGGCCACTCCTTTTGCTATGTGAGACCTGACCCGAACCGTTTATCCTCCTCCAAAGTCCACTCAGAGGAAACAACCACTTTCCGTACCATATC CGGTGCCTCCGTCAGCGCCAATACATCAACGCCACTCTCCACGGCCTTCATAGACCCTTATGTTTACAACACCATCGATCGAGCTGCTTCTTTTGAGAGC TCAACTTCTTTTGCTTCGATCCCTCTGCAACCAATCCCCAGAAGTCTATTTGGGTCCCTTAATTCTGGCCCCTTAACTGGAAACTCGGCTCTGATGCCCT GTTCAGGTCCGATGGAGAGGGGGTTCTTGTCGGGTCCGATTGAGAGAGGATTCATGTCAGGTCCGTTGGATCGTGGGTTGTTCTCGGGTCCTCTCGAAAA GGGCAGTTCTGATCAGTTTCAAAGAAGCTTTTCCCATGGTGGTTTTGCTTTTAGATCCAGATCGGGTAAAAGGTCGCTGATTCGGGTTTTACAAAGAGCA ATATGTAAAACGATCACTCGTGGACACAACTCAATTGTGGCTCCTATAAAAGGAGGGGTTGGTGTTGTTAAAGAACCTGAGTGGATACTGAGTTCAGAGA AGCAGAATGAGTTGACAGTAAGTAGTGTTAATTTGAGTAGTGATGGTAGTTTAGAGGATGATGATTCTTTAGAGAGTCAAAATCTTCAATGGGCTCAAGG AAAAGCAGGGGAGGATAGGGTCCATGTTGTTGTATCAGAGGAGCATGGTTGGGTTTTTGTTGGGATTTATGATGGATTCAATGGTCCAGATGCGCCTGAT TATCTTTTGTCCAATCTCTACTCTGCTGTGCATAAAGAGCTTAAAGGTTTGTTGTGGGACGATAAGTTTGAGCCTGATCAAATTTCTTCCCATGCATCTT CCCCTTTTCAATCCGAAACTAGTAATTCTGTTGAAAGTACTAATTCAAGATTAGAAAATGTGATACATAACAGTGAAACTAATGGAAACTGTAGAAATTA TGAGTGTTATCAGTATTTGGATCAAGATAATCATCCGTGTCCGAGTGGTGATGCTGGTTTTGATATGAGTCTGAGAAGAAAAAGGAGTAGGAGTTCCAAA GGTAAATATAGAGGGGCTGCTAAAAAATGGGAGGAAAATCAGAGGAGATGGAAATGTGAATGGGACAGGGAAAGAATGGAACTTGATAAGAGATTAAAGG AGCAACTGAATCGATCTGGATCGGATGCTAGCCCAATAAACCATGCAGATGTGTTGAAAGCTTTGTCTCAGGCTTTGAAGAAAACAGAGGAGTCATATTT GGAGATTGCCGATAAGATGCTAGTGGAGAATCCGGAGCTGTCTTTGATGGGTTCTTGTGTTCTTGTGATGCTCATGAAGGGAGAAGATGTCTATGTGATG AATGTGGGTGATAGTAGAGCAGTATTAGCACAAAAGGCAGAGCCTGATTATTGGCTAGGGAAGATCAGGCAGGACTTAGAAAGGATTAACGAGGAAACAT TGCATGATCTTGAAGCTTTTGATGCTGAACGATCAAATTCAATGCCTGTTTTGACTGCCTCACAGCTGAGTGTTGATCATAGCACCAGTGTGGAAGAGGA AGTGCAAAGAATAAAAAAGGAACATCCAGATGATGCTTGTGCTGTGGTGAATGACCGCGTGAAAGGTTCATTGAAGGTTACTCGGGCATTTGGTGCTGGT TTTCTCAAGCAGCCTAGATGGAACAATGCACTTCTAGAGATGTTCAGAATTGACTACATTGGCAATTCCCCTTATGTAACTTGTTTACCATCTCTCTACC ACCATAGACTTGGCCCAAAAGATAGGTTTCTGATATTATCATCTGATGGACTTTATCAATACTTAACAAATGACGAAGCTGTTTATGAAGTTGAGCTGTT CATCACCTTGCAACCTGAAGGAGATCCAGCTCAACATCTGGTCGAGGAAGTTCTGTTCCGCGCAGCTAAGAAAGCTGGTATGGACTTCCACGAGTTGCTT GATATACCACAAGGGGATCGACGGCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTAGAGGGAAGGATATGGAGATCGTGTGTATAA
AA sequence Show only first row Show all	>Potri.001G239300.1 pacid=42792659 polypeptide=Potri.001G239300.1.p locus=Potri.001G239300 ID=Potri.001G239300.1.v4.1 annot-version=v4.1 MGNGFGKLTVCFTGDGEARRRKVLSELISDPLDEGLGHSFCYVRPDPNRLSSSKVHSEETTTFRTISGASVSANTSTPLSTAFIDPYVYNTIDRAASFES STSFASIPLQPIPRSLFGSLNSGPLTGNSALMPCSGPMERGFLSGPIERGFMSGPLDRGLFSGPLEKGSSDQFQRSFSHGGFAFRSRSGKRSLIRVLQRA ICKTITRGHNSIVAPIKGGVGVVKEPEWILSSEKQNELTVSSVNLSSDGSLEDDDSLESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPD YLLSNLYSAVHKELKGLLWDDKFEPDQISSHASSPFQSETSNSVESTNSRLENVIHNSETNGNCRNYECYQYLDQDNHPCPSGDAGFDMSLRRKRSRSSK GKYRGAAKKWEENQRRWKCEWDRERMELDKRLKEQLNRSGSDASPINHADVLKALSQALKKTEESYLEIADKMLVENPELSLMGSCVLVMLMKGEDVYVM NVGDSRAVLAQKAEPDYWLGKIRQDLERINEETLHDLEAFDAERSNSMPVLTASQLSVDHSTSVEEEVQRIKKEHPDDACAVVNDRVKGSLKVTRAFGAG FLKQPRWNNALLEMFRIDYIGNSPYVTCLPSLYHHRLGPKDRFLILSSDGLYQYLTNDEAVYEVELFITLQPEGDPAQHLVEEVLFRAAKKAGMDFHELL DIPQGDRRRYHDDVSIIVISLEGRIWRSCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28890		PLL4	poltergeist like 4 (.1)		Potri.001G239300 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102800 [exp]	7.68	0.9047
AT1G35710			Protein kinase family protein ...		Potri.014G195100 [exp]	10.00	0.8835
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	10.77	0.8967
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Potri.002G191900 [exp]	14.24	0.8872	GA2.6
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	19.89	0.8915
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.009G080600 [exp]	20.49	0.8877
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088290 [exp]	24.00	0.8860
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.010G077000 [exp]	24.18	0.8924
AT1G21740			Protein of unknown function (D...		Potri.005G179100 [exp]	27.27	0.8003
AT1G67530			ARM repeat superfamily protein...		Potri.007G023700 [exp]	27.27	0.8688

Compare expression of checked genes

Potri.001G239300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.