Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28900 179 / 1e-58 OEP16, ATOEP16-L, ATOEP16-1 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) AT4G16160 71 / 5e-16 ATOEP16-2, ATOEP16-S Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142300 [exp] 68 / 6e-15 AT4G16160 238 / 4e-81 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Potri.008G107200 [exp] 66 / 5e-14 AT4G16160 214 / 9e-72 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016545 [exp] 187 / 6e-62 AT2G28900 185 / 4e-61 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) Lus10040810 [exp] 162 / 4e-52 AT2G28900 181 / 9e-60 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1) Lus10016878 [exp] 70 / 2e-15 AT4G16160 209 / 1e-69 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2) Lus10037743 [exp] 55 / 1e-09 AT4G16160 186 / 3e-60 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.001G239900.1 pacid=42793615 polypeptide=Potri.001G239900.1.p locus=Potri.001G239900 ID=Potri.001G239900.1.v4.1 annot-version=v4.1 ATGCCAAGTAGCAGTTTCGGGGCTTCTTTAGCAACTCCAAAACTTAATGTGGCAATCGACACGGGCAATCCCTTCCTCAATGTCACCGTTGATGGTTTCT TGAAGATTGGCACTGTTGCAGCAGCTAAATCACTTGCTGAGGATGCATATTATGTCGTCAAAGGAGGGAATTTCTCAGGTCGCAAGATTGAGCATTCGTT GAAGAAGATGTGCAAGGAAGGTGCTTATTGGGGAACTGTTGCTGGCATGTATGTTGGGATGGAATATGGAATGGAGAGAATTCGTGGCACTCATGACTGG AAGAATGCCATGCTTGGAGGTGCTTTGACAGGAGCTCTGATATCTGCTGCCAGTAATAAGAGTAAAGACAATGTTGTAATTGATGCCATTGCTGGGGGTG CCATTGCAACTGCATCAACATTCCTCAACTATCTCATATGA
AA sequence Show only first row Show all	>Potri.001G239900.1 pacid=42793615 polypeptide=Potri.001G239900.1.p locus=Potri.001G239900 ID=Potri.001G239900.1.v4.1 annot-version=v4.1 MPSSSFGASLATPKLNVAIDTGNPFLNVTVDGFLKIGTVAAAKSLAEDAYYVVKGGNFSGRKIEHSLKKMCKEGAYWGTVAGMYVGMEYGMERIRGTHDW KNAMLGGALTGALISAASNKSKDNVVIDAIAGGAIATASTFLNYLI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Potri.001G239900 [exp]	0	1
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Potri.001G398800 [exp]	1.41	0.8157
AT1G80530			Major facilitator superfamily ...		Potri.003G012300 [exp]	10.39	0.7116
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.010G082900 [exp]	11.48	0.7416
AT5G64860		DPE1	disproportionating enzyme (.1)		Potri.007G081400 [exp]	12.00	0.7366	DPE1.1
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Potri.012G007400 [exp]	12.64	0.7835
					Potri.001G075201 [exp]	12.72	0.7763
AT4G21220		AtLpxD2	lipid X D2, Trimeric LpxA-like...		Potri.004G039400 [exp]	13.22	0.6920
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G074500 [exp]	15.96	0.7444
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Potri.013G107600 [exp]	17.54	0.7524
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.005G229500 [exp]	18.97	0.7266	Pt-DFR.1

Compare expression of checked genes

Potri.001G239900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.