Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24318 508 / 3e-178 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G55430 479 / 6e-167 O-Glycosyl hydrolases family 17 protein (.1) AT3G46570 461 / 4e-161 Glycosyl hydrolase superfamily protein (.1) AT2G39640 411 / 5e-139 glycosyl hydrolase family 17 protein (.1) AT2G16230 405 / 2e-137 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 394 / 9e-133 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 340 / 2e-112 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 337 / 3e-111 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 334 / 6e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G42720 321 / 2e-105 Glycosyl hydrolase family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G055900 [exp] 577 / 0 AT3G55430 494 / 8e-174 O-Glycosyl hydrolases family 17 protein (.1) Potri.008G056000 [exp] 565 / 0 AT3G55430 494 / 1e-173 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 526 / 0 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.010G203800 [exp] 466 / 1e-161 AT3G55430 354 / 2e-118 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 427 / 2e-146 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 422 / 1e-144 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 413 / 4e-141 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.015G010100 [exp] 394 / 2e-134 AT5G24318 466 / 1e-163 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.014G158400 [exp] 354 / 1e-117 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016539 [exp] 648 / 0 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040808 [exp] 644 / 0 AT5G24318 484 / 2e-168 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004962 [exp] 608 / 0 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040294 [exp] 529 / 0 AT3G55430 483 / 2e-169 O-Glycosyl hydrolases family 17 protein (.1) Lus10023245 [exp] 474 / 5e-165 AT5G24318 561 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10008865 [exp] 443 / 6e-153 AT5G24318 517 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10005459 [exp] 429 / 6e-149 AT5G24318 341 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040461 [exp] 407 / 2e-138 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 407 / 2e-138 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10012080 [exp] 405 / 2e-137 AT2G16230 564 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.001G240000.1 pacid=42793647 polypeptide=Potri.001G240000.1.p locus=Potri.001G240000 ID=Potri.001G240000.1.v4.1 annot-version=v4.1 ATGGCAAAACCTCGCACTCTTTTCCTGCTCTTGTTAACTTTCTACTACCACTTCAGCTCCAGCTCCGCCGCCTACACAGTTGGTGTTAACTACGGGACCG TAGCAAACAACCTTCCTTCACCATCCCAAGTAGCTAGCTTCCTTAAAACTCAAACCACCATAGACCGGGTCAAGATCTTTGACACCAACCCGGACATTCT CCGCGCCTTTGCAAACACTGGAATCTCAGTAACTGTCACCGTCGGCAACGGCGACATCCCATCTCTTGCCAAGCTCCCTGCTGCCCAATCTTGGATCGCC GCTAACATCTTACCATTCCATCCTCAAACATCCATCAAATACATTGCAGTAGGAAACGAGGTCCTTGCCACTTCCGACAAAGTTCTAATAGCACACACTT TGCCTGCTATGAAAGCCCTGACATCAGCACTTGAACTTGCTAATATCACTACTATTCACGTCGCGACTCCTCATTCTTTAGGTATATTATCCTCATCTGA ACCTCCCAGTACGGGCCGGTTTCGAAAAGGGTACGATCAAAGAATTTTTGCTCCGTTCCTCGATTATCACCGCAAGACAAAGTCTCCTTTCATGGTTAAT CCATACCCCTATTTTGGATTCAAGGCAGAGACTTTAAATTACGCGTTGTTTAAGCCAAACAGCGGAGTTTTCGACGCGGCGACGGGAAACAATTACACCA ACATGTTCGATGCTCAGCTTGACGCGGTTTATTCGGCGATGAAGAGGTTGGGTTATGGTGATGTTGACATTGTGGTGGCGGAAACGGGTTGGCCGTCCGT GGGTGACCCGAATCAACCTGGTGTAAGCATGGAGAACGCGATCTCGTACAACAAGAACCTCGTGAAGCACGTGAATTCAGGAAAAGGAACCCCTCTGATG CCTAATAGAACTTTCGAGACTTACGTTTTCTCTTTGTTTAACGAGAATCTTAAACCCTCGGTTTCAGAGAGGAATTTCGGGTTGTTCAAGCCGGATCTTA CCCCGGTTTATGATGTCGGAATTTTACGCGATGACAAGGCACTGGCTCCGACACCCGGTACGGCAGCGGATGCCCCATCATCGTCTAGTCCCGGGAGGCA GAGGCAGTGGTGCGTGCCAAAATCAGACGCTAGTGATGACGCGTTACAGAAGAACATCGATTACGTGTGTAGCAATGGAGTTGATTGCAAGCCCATACAA CAAGGTGGGCCTTGCTTTGTCCCTGATACTGTGAAGTCACACGCATCATATGCAATGAATGCCTTCTATCAGGCCTCTGGTCGTCATGACTACGACTGTG ATTTCAGCCACACTGGAGTGCTCACCTCCATTGACCCTAGTTACGAGGCGTGTGATTATCCGTTCGATGGGCTAAAGTGGCAGCAAAAGTCGGTCACGGG AATCTCGAGGAGATTGTACTGCACCGTTGAAGAGATTCTTATAGTGGCTTCTGGCTTGATATTTGTCCACTTTTTTCTTTTTTAG
AA sequence Show only first row Show all	>Potri.001G240000.1 pacid=42793647 polypeptide=Potri.001G240000.1.p locus=Potri.001G240000 ID=Potri.001G240000.1.v4.1 annot-version=v4.1 MAKPRTLFLLLLTFYYHFSSSSAAYTVGVNYGTVANNLPSPSQVASFLKTQTTIDRVKIFDTNPDILRAFANTGISVTVTVGNGDIPSLAKLPAAQSWIA ANILPFHPQTSIKYIAVGNEVLATSDKVLIAHTLPAMKALTSALELANITTIHVATPHSLGILSSSEPPSTGRFRKGYDQRIFAPFLDYHRKTKSPFMVN PYPYFGFKAETLNYALFKPNSGVFDAATGNNYTNMFDAQLDAVYSAMKRLGYGDVDIVVAETGWPSVGDPNQPGVSMENAISYNKNLVKHVNSGKGTPLM PNRTFETYVFSLFNENLKPSVSERNFGLFKPDLTPVYDVGILRDDKALAPTPGTAADAPSSSSPGRQRQWCVPKSDASDDALQKNIDYVCSNGVDCKPIQ QGGPCFVPDTVKSHASYAMNAFYQASGRHDYDCDFSHTGVLTSIDPSYEACDYPFDGLKWQQKSVTGISRRLYCTVEEILIVASGLIFVHFFLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.001G240000 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.008G185500 [exp]	2.44	0.8487
AT2G35470			unknown protein		Potri.003G095500 [exp]	2.82	0.8622
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	6.00	0.8630
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.002G084800 [exp]	6.24	0.8971
AT1G70280			NHL domain-containing protein ...		Potri.010G094200 [exp]	9.38	0.8644
AT5G01910			unknown protein		Potri.006G109400 [exp]	16.88	0.8562
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Potri.017G029700 [exp]	18.54	0.7855
AT2G05790			O-Glycosyl hydrolases family 1...		Potri.014G158400 [exp]	19.26	0.8458
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	24.26	0.8105	ACCC.1
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Potri.005G144900 [exp]	30.19	0.8284

Compare expression of checked genes

Potri.001G240000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.