Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MBD905,Pt-MBD5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46580 117 / 5e-33 MBD05, MDB5, MDB05, MBD5, ATMBD5 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) AT5G59380 104 / 2e-27 MBD6, ATMBD6 methyl-CPG-binding domain 6 (.1) AT5G59800 47 / 3e-06 ATMBD7, MBD7 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031100 [exp] 310 / 2e-108 AT3G46580 110 / 2e-30 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Potri.009G027600 [exp] 69 / 4e-14 AT5G59800 96 / 3e-23 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Potri.015G140100 [exp] 47 / 4e-06 AT5G52230 81 / 2e-15 methyl-CPG-binding domain protein 13 (.1.2) Potri.012G138300 [exp] 45 / 1e-05 AT5G52230 84 / 2e-16 methyl-CPG-binding domain protein 13 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004963 [exp] 127 / 4e-34 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10005460 [exp] 115 / 2e-32 AT5G59380 101 / 1e-27 methyl-CPG-binding domain 6 (.1) Lus10005888 [exp] 54 / 2e-08 AT5G59800 123 / 5e-32 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10027447 [exp] 48 / 2e-06 AT3G46580 47 / 3e-06 METHYL-CPG-BINDING DOMAIN PROTEIN 05, methyl-CPG-binding domain protein 5 (.1) Lus10040859 [exp] 44 / 1e-05 AT5G59800 66 / 3e-13 ARABIDOPSIS THALIANA METHYL-CPG-BINDING DOMAIN 7, methyl-CPG-binding domain 7 (.1) Lus10038869 [exp] 45 / 2e-05 AT5G52230 82 / 4e-16 methyl-CPG-binding domain protein 13 (.1.2) Lus10014989 [exp] 42 / 0.0003 AT5G52230 86 / 4e-17 methyl-CPG-binding domain protein 13 (.1.2) Lus10029564 [exp] 41 / 0.0003 AT5G59380 46 / 1e-05 methyl-CPG-binding domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF01429 [poplar] [flax] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G240100.1 pacid=42792703 polypeptide=Potri.001G240100.1.p locus=Potri.001G240100 ID=Potri.001G240100.1.v4.1 annot-version=v4.1 ATGTCAGACACCGCAACTTCGGCTCAAGTTCCGGGCATGAACCCGCCTGGACCCAAAGCAGATGATCCCCTCCTTCAAAACGGCTCCTCTATCGACCCTA ACAAGCACTCCACCGCCGATGAAACCCTAAACAGAACGAACGACAAAGGCAATCAACAACCGGTGACTCCTGTTCGAGAGAAGAGAAGATTATCGGAAAC GGCCGTTGATACGAGTTGGTTGCCACCGGGATGGGTTGTTGAAGATCGGGTTCGGACCTCTGGTGCGACAGCTGGCACCAGAGATAAGTACTACATTGAG CCTGTCTCAGGTCGTCGGTTCAGGTCTAAGAAAGATGTGCAATATTATTTGGAAACTGGAACTTTGAAGAAGAGGGGCAAAGTGGCAGAGAACGTTGATG CTGATACTAATTCTGCAGAGAATTCCAAGAGTAGTAAAAACAAGTCTGGTGCAAACACAAATTTTGCATGGAACTTTGATTCTTTTAATGTTCCTGATCG GACCGAATGGTTTCTTACAGAAGCAAACGAAGATACCTGGACTCCCTTCATTGATGGTAAAAAAGTGCCTCTATATGATAAGGAACAATGGGATTTTACA TTTGCATCTCTGACGACTAGCAGTCATGGTTACAGAATGCATTGA
AA sequence Show only first row Show all	>Potri.001G240100.1 pacid=42792703 polypeptide=Potri.001G240100.1.p locus=Potri.001G240100 ID=Potri.001G240100.1.v4.1 annot-version=v4.1 MSDTATSAQVPGMNPPGPKADDPLLQNGSSIDPNKHSTADETLNRTNDKGNQQPVTPVREKRRLSETAVDTSWLPPGWVVEDRVRTSGATAGTRDKYYIE PVSGRRFRSKKDVQYYLETGTLKKRGKVAENVDADTNSAENSKSSKNKSGANTNFAWNFDSFNVPDRTEWFLTEANEDTWTPFIDGKKVPLYDKEQWDFT FASLTTSSHGYRMH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	0	1	MBD905,Pt-MBD5.1
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	1.41	0.8564	Pt-MPI7.1
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.004G134400 [exp]	2.82	0.8311
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.005G062900 [exp]	3.16	0.8305
AT1G01730			unknown protein		Potri.015G145000 [exp]	3.16	0.8347
AT3G09030			BTB/POZ domain-containing prot...		Potri.016G112900 [exp]	5.47	0.7999
AT2G15560			Putative endonuclease or glyco...		Potri.004G140400 [exp]	5.74	0.8316
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.009G031100 [exp]	6.00	0.8234	MBD5.2,MBD904
AT5G19910		MED31	SOH1 family protein (.1.2)		Potri.015G110900 [exp]	7.93	0.8104
AT3G21865		PEX22	peroxin 22 (.1)		Potri.017G038800 [exp]	9.79	0.8058
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	9.89	0.8160

Compare expression of checked genes

Potri.001G240100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.