Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55440 377 / 9e-134 CYTOTPI, ATCTIMC, TPI CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) AT2G21170 279 / 4e-94 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031200 [exp] 412 / 1e-147 AT3G55440 358 / 4e-126 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.010G203500 [exp] 396 / 3e-141 AT3G55440 419 / 5e-150 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.008G056300 [exp] 388 / 5e-138 AT3G55440 400 / 1e-142 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Potri.009G129500 [exp] 286 / 9e-97 AT2G21170 479 / 8e-172 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Potri.004G168000 [exp] 280 / 2e-94 AT2G21170 489 / 5e-176 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005461 [exp] 391 / 3e-139 AT3G55440 454 / 4e-164 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10040807 [exp] 385 / 9e-137 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10016538 [exp] 385 / 9e-137 AT3G55440 449 / 2e-162 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10004963 [exp] 362 / 2e-124 AT3G55440 426 / 1e-149 CYTOSOLIC ISOFORM TRIOSE PHOSPHATE ISOMERASE, CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1) Lus10012171 [exp] 282 / 3e-95 AT2G21170 481 / 5e-173 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2) Lus10007575 [exp] 258 / 5e-86 AT2G21170 466 / 2e-167 PLASTID ISOFORM TRIOSE PHOSPHATE ISOMERASE, triosephosphate isomerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00121 [poplar] [flax] TIM Triosephosphate isomerase
Representative CDS sequence Show only first row Show all	>Potri.001G240300.1 pacid=42790932 polypeptide=Potri.001G240300.1.p locus=Potri.001G240300 ID=Potri.001G240300.1.v4.1 annot-version=v4.1 ATGGCCAGAAAATTCTTCGTCGGCGGAAACTGGAAATGCAATGGGACCATTGAGGGGGTGAAGAAGATTGTCACCATGCTAAATGAAGCTGAGGTTCCAT CCAAGGATGTTGTAGAGGTTGTTGTGAGCCCTCCATTTGTATTTCTTCCTCTGGTAAAAAGTTTGCAGCGACCTGATTTCCAAGTAGCTGCCCAAAATTG CTGGGTTCGCAAAGGTGGTGCTTTTACTGGAGAGATTAGTGCTGAGATGCTCGTGAATTTGGGCATTCCCTGGGTGATTCTTGGCCATTCTGAACGGAGA TCTCTTTTAAATGAGTCAAATGAGTTTGTTGGAGATAAAGTTGCTTATGCACTTTCTTTAGGCTTGAAAGTGATTGCATGTATTGGCGAGACACTTCAGC AGAGAGAATCAGGATCTGCAATGGCTGTTGTGGCTGCACAAACAAAAGCAATTGCAGATAAAGCTTCAAATTGGGCCAATGTCGTTTTGGCTTATGAGCC AGTTTGGGCCATCGGTACAGGAAAGGTGGCGACACCTGATCAAGCTCAAGAAGTCCATCTTGAATTGAGGAAATGGCTTCATGACAATGTTGGTGCCGAA GTTGCTGCAACAACTAGAATTATCTACGGAGGTTCTGTAAATGGAGCTAACTGCAAAGAGTTGGCAGCGCAACCAGATATTGATGGATTTTTAGTCGGTG GAGCTTCACTCAAGCGGGAGTTCATTGATATCATCAAATCTTTAACGGTGAAGAAGAGTCAACTGTGA
AA sequence Show only first row Show all	>Potri.001G240300.1 pacid=42790932 polypeptide=Potri.001G240300.1.p locus=Potri.001G240300 ID=Potri.001G240300.1.v4.1 annot-version=v4.1 MARKFFVGGNWKCNGTIEGVKKIVTMLNEAEVPSKDVVEVVVSPPFVFLPLVKSLQRPDFQVAAQNCWVRKGGAFTGEISAEMLVNLGIPWVILGHSERR SLLNESNEFVGDKVAYALSLGLKVIACIGETLQQRESGSAMAVVAAQTKAIADKASNWANVVLAYEPVWAIGTGKVATPDQAQEVHLELRKWLHDNVGAE VAATTRIIYGGSVNGANCKELAAQPDIDGFLVGGASLKREFIDIIKSLTVKKSQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Potri.001G240300 [exp]	0	1
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	3.60	0.9876
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	6.00	0.9860
AT2G10940			Bifunctional inhibitor/lipid-t...		Potri.006G065500 [exp]	7.34	0.9869
AT4G08910			unknown protein		Potri.002G231400 [exp]	9.38	0.9859
AT1G12570			Glucose-methanol-choline (GMC)...		Potri.001G111500 [exp]	12.84	0.9838
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	15.58	0.9831
AT3G05470			Actin-binding FH2 (formin homo...		Potri.005G026300 [exp]	16.09	0.9833
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G115800 [exp]	16.24	0.9834	CPRD49.1
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126900 [exp]	17.32	0.9830
AT2G18969			unknown protein		Potri.018G090200 [exp]	17.32	0.9825

Compare expression of checked genes

Potri.001G240300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.