Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-APK1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07570 591 / 0 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 580 / 0 APK1B protein kinase 1B (.1.2.3) AT5G02290 530 / 0 NAK Protein kinase superfamily protein (.1.2) AT2G39660 468 / 9e-165 BIK1 botrytis-induced kinase1 (.1) AT2G02800 461 / 1e-161 Kin2, APK2B protein kinase 2B (.1.2) AT1G14370 444 / 4e-155 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT3G55450 440 / 5e-154 PBL1 PBS1-like 1 (.1.2) AT5G15080 433 / 1e-149 Protein kinase superfamily protein (.1) AT3G28690 430 / 4e-149 Protein kinase superfamily protein (.1.2.3) AT3G01300 431 / 7e-149 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031300 [exp] 720 / 0 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 575 / 0 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 552 / 0 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.008G056400 [exp] 551 / 0 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G093700 [exp] 473 / 1e-166 AT2G02800 627 / 0.0 protein kinase 2B (.1.2) Potri.008G148000 [exp] 471 / 1e-165 AT2G02800 604 / 0.0 protein kinase 2B (.1.2) Potri.004G129000 [exp] 445 / 1e-154 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 442 / 3e-153 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 441 / 4e-153 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016537 [exp] 611 / 0 AT2G28930 581 / 0.0 protein kinase 1B (.1.2.3) Lus10040806 [exp] 606 / 0 AT2G28930 573 / 0.0 protein kinase 1B (.1.2.3) Lus10005462 [exp] 585 / 0 AT2G28930 569 / 0.0 protein kinase 1B (.1.2.3) Lus10004964 [exp] 583 / 0 AT2G28930 570 / 0.0 protein kinase 1B (.1.2.3) Lus10024391 [exp] 565 / 0 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 562 / 0 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 543 / 0 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 528 / 0 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10000954 [exp] 519 / 0 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012850 [exp] 458 / 3e-160 AT2G02800 614 / 0.0 protein kinase 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G240400.4 pacid=42793404 polypeptide=Potri.001G240400.4.p locus=Potri.001G240400 ID=Potri.001G240400.4.v4.1 annot-version=v4.1 ATGGGGATTTGCTTGAGTGCCCAAATTAAAGCTGAGAGCTCATGCAACACAGTTGCAGGGTTGAGTTCAAAGTATGTTAGCACAGATGGGAATGATCTGA GCAGTACGGGTAGCAAGGTCTTGTCTGTTTCAGTGCCTCCAACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCCACCAATCTGAAGAGCTTTAGTTTTTC TGATCTCAAAATGGCCACCAGGAGTTTCCGTCCTGATAGTGTCTTAGGAGAAGGTGGTTTTGGTTCAGTTTTTAAGGGATGGATTGATGAGCAGTCATTT TCTGCTGCCAAGCCTGGAACTGGAATTGTTATTGCTGTGAAAAGGCTTAACCAAGACGGTTTCCAAGGTCACAAGGAGTGGCTGGCAGAAGTAAATTATC TGGGGCAGTTCTATCATCCTCACCTTGTGAAGCTGATTGGCTATTGCTTAGAGGATGAACACCGACTATTGGTATATGAATTTATGCCTCGAGGCAGTTT GGAAAATCATTTATTTAGAAGAGGTTCTTATTTCCAACCGCTTTCTTGGAACCTCCGCTTGAAGGTTGCTCTTGGTGCTGCAAAGGGTCTTGCGTTTCTT CATTGTGCTGAAACACAAGTAATATACAGGGACTTCAAGACTTCTAACATTCTACTTGATTCGAAATACAATGCAAAACTTTCTGATTTTGGGTTGGCCA AGGATGGACCGACTGGTGATAAGAGTCATGTATCTACCAGGGTTATAGGTACCTATGGTTATGCTGCTCCAGAATATCTAGCTACCGGTCATCTAACTGC CAAAAGTGATGTCTATAGCTTCGGAGTTGTTTTGCTAGAAATGTTATCTGGCAGGAGAGCAATCGACAAAAATCGCCCATCTGGAGAGCACAATCTTGTT GAATGGGCTAAACCCTATCTAGCTAACAAACGTAAGATCTTTCGCATCCTAGATAATCGTCTTGAAGGCCAGTATTCAATGGATGTTGCCTTTAAGGCCT CTACACTTGCGCTGCGTTGCCTATCCATAGAAACCAAGTTTCGACCAACTATGGATGAGGTTGTGACAGCAATGGAGCAGCTTCAGGATTCCAAAGAAAC TGGTAGTGCAAATGGCCATGCAAGCAATGCTCCCCGAATTCGTAGACGAAGTGCAGATGACACTATTAGTGGAAGGAATACTGCTGCATATCCTCGGCCC TCCACATCCCCACTATATGCTTGA
AA sequence Show only first row Show all	>Potri.001G240400.4 pacid=42793404 polypeptide=Potri.001G240400.4.p locus=Potri.001G240400 ID=Potri.001G240400.4.v4.1 annot-version=v4.1 MGICLSAQIKAESSCNTVAGLSSKYVSTDGNDLSSTGSKVLSVSVPPTPRSEGEILQSTNLKSFSFSDLKMATRSFRPDSVLGEGGFGSVFKGWIDEQSF SAAKPGTGIVIAVKRLNQDGFQGHKEWLAEVNYLGQFYHPHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWNLRLKVALGAAKGLAFL HCAETQVIYRDFKTSNILLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVIGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEHNLV EWAKPYLANKRKIFRILDNRLEGQYSMDVAFKASTLALRCLSIETKFRPTMDEVVTAMEQLQDSKETGSANGHASNAPRIRRRSADDTISGRNTAAYPRP STSPLYA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	0	1	Pt-APK1.2
AT1G21830			unknown protein		Potri.005G177600 [exp]	1.00	0.8885
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	3.46	0.8410
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.018G047800 [exp]	4.47	0.8095
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	4.69	0.8847	Pt-BRI1.1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	7.21	0.8465	Pt-BRI1.2
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G155700 [exp]	9.53	0.8146
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	10.39	0.8107
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G069300 [exp]	12.64	0.8117
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Potri.010G149400 [exp]	12.68	0.8386
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G141200 [exp]	13.19	0.8521

Compare expression of checked genes

Potri.001G240400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.