Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28940 563 / 0 Protein kinase superfamily protein (.1.2) AT3G09830 431 / 5e-149 Protein kinase superfamily protein (.1.2) AT5G03320 412 / 6e-142 Protein kinase superfamily protein (.1) AT2G39110 402 / 2e-137 Protein kinase superfamily protein (.1) AT5G47070 340 / 1e-113 Protein kinase superfamily protein (.1) AT3G28690 328 / 3e-109 Protein kinase superfamily protein (.1.2.3) AT5G15080 330 / 1e-108 Protein kinase superfamily protein (.1) AT4G17660 325 / 5e-108 Protein kinase superfamily protein (.1) AT3G01300 324 / 3e-106 Protein kinase superfamily protein (.1) AT1G61590 317 / 2e-104 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031500 [exp] 706 / 0 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 447 / 2e-155 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 438 / 7e-152 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 426 / 2e-146 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 388 / 5e-132 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G149100 [exp] 358 / 7e-121 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 350 / 2e-117 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 335 / 1e-110 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 331 / 3e-109 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016536 [exp] 552 / 0 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 538 / 0 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10038711 [exp] 434 / 1e-149 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 423 / 6e-145 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001088 [exp] 355 / 6e-120 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10040135 [exp] 353 / 3e-119 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10030668 [exp] 332 / 2e-109 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 332 / 3e-109 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10024391 [exp] 312 / 5e-103 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 312 / 6e-103 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G240500.2 pacid=42791161 polypeptide=Potri.001G240500.2.p locus=Potri.001G240500 ID=Potri.001G240500.2.v4.1 annot-version=v4.1 ATGAAGTGTTTTCATTTCACGAACGGGGAAAGAAGAGAAGATGAAGACGTCGTCGTTTCGAAGGTATCCAGAGTATCCTGGGCAAGGTCCTTTAGTGTGG CGTCCAGCAGTCTGGATGCAAGGCGGTCCGACCTTGACTCGGACAGCTACTGCTACTCCTCCAGAGACTTGTCTGAATCAGTCGGGTTCTTCGAGTTACT GAGTCAAAGAAGAGCTAATGATCTGCGAGTCTTCAGTTTCTCCGAGCTCAAATCTGCTACTAGAGGGTTTAGTAGAGGTTTGCTGATTGGTGAGGGAGGC TTTGGTTGCGTTTATAGAGGCGTCGTTAAAGTTCCGGATGATCATGACTCTAATTCCAAGATGGATGTTGCTATAAAGCAGTTGAATCGTCACGGTTTCC AGGGGCATAAGGAATGGATTAATGAGGTGAGCTTTTTAGGTGTGGTTAAGCATCCAAATCTTGTTAAATTAGTGGGGTATTCTGCTGAAGATGATGAACG AGGGATTCAAAGGCTTTTGGTTTATGAGCTTATGCGTAATAAAAGCTTGGAAGACCATTTATTGGCGAAGGTACTACCCGTACCTCTTCCGTGGATGACA AGATTAAAAATTGCTCAAGATGCAGCTCGCGGATTGGCTTATCTTCATGAAGAAATGGACTTTCAGCTAATATTCCGAGATTTTAAAGCATCAAACGTTC TACTAGACGAGGACTTCAATGCAAAGCTTTCAGACTTCGGACTGGCTAGGCTGGGACCTCCTGAAGGACTCGGACATGTTTCAACATCAGTTGTGGGCAC AGTGGGTTATGCAGCTCCAGAGTATGTTCAGACTGGCAGGCTTACTGCAAAGAGTGATGTATGGAGCTTTGGGGTGGTTATGTATGAGCTTATAACTGGA AGGCGAGCAGTAGAGAGAAACCTGCCTCGGGGTGAGCAAAAGCTCTTGGAATGGGTAAAACCATTTGTATCAGATTCGAAGAAGCTCCACCTTATCTTAG ACCCACGACTTGAAGGGCAATATTGCATCAAATCAGCCCAGAAACTATCAGCCTTGGCAAACAAGTGTGTAGCAAAGCAGCCCAAGTCCCGCCCTAAAAT GAGCGAGGTAGTAGAGATGCTGGGAAACATCATCGGTGAAATTTCATCTCAGGATGAAGATGCCCCGGAACCTGCCTCCGAAATTGAAGAAGTTAAGGAA GAGGCCACTGGGGAGACCGAGGCCGAGTCTAACAAACAGGGTAACAGTAATCGGAAGAAGGTTTTTGACATAAGAGAAATGGTCAACTTGAGAAATAGAT CCATTGGGAAATTAGATTGGAGAAACTGGACGCCAGGGTTGGTTAGAACTACATGA
AA sequence Show only first row Show all	>Potri.001G240500.2 pacid=42791161 polypeptide=Potri.001G240500.2.p locus=Potri.001G240500 ID=Potri.001G240500.2.v4.1 annot-version=v4.1 MKCFHFTNGERREDEDVVVSKVSRVSWARSFSVASSSLDARRSDLDSDSYCYSSRDLSESVGFFELLSQRRANDLRVFSFSELKSATRGFSRGLLIGEGG FGCVYRGVVKVPDDHDSNSKMDVAIKQLNRHGFQGHKEWINEVSFLGVVKHPNLVKLVGYSAEDDERGIQRLLVYELMRNKSLEDHLLAKVLPVPLPWMT RLKIAQDAARGLAYLHEEMDFQLIFRDFKASNVLLDEDFNAKLSDFGLARLGPPEGLGHVSTSVVGTVGYAAPEYVQTGRLTAKSDVWSFGVVMYELITG RRAVERNLPRGEQKLLEWVKPFVSDSKKLHLILDPRLEGQYCIKSAQKLSALANKCVAKQPKSRPKMSEVVEMLGNIIGEISSQDEDAPEPASEIEEVKE EATGETEAESNKQGNSNRKKVFDIREMVNLRNRSIGKLDWRNWTPGLVRTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28940			Protein kinase superfamily pro...		Potri.001G240500 [exp]	0	1
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	15.49	0.6744
AT5G46060			Protein of unknown function, D...		Potri.001G372900 [exp]	16.94	0.7341
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	18.49	0.7034
AT2G39435			Phosphatidylinositol N-acetygl...		Potri.010G211700 [exp]	20.71	0.7169
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	27.65	0.6879
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	37.34	0.6594
AT3G17850			Protein kinase superfamily pro...		Potri.012G044700 [exp]	41.42	0.6802
AT5G49960			unknown protein		Potri.019G097000 [exp]	43.93	0.6851
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.014G084500 [exp]	63.07	0.6650
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Potri.012G105800 [exp]	109.69	0.6255	Pt-PHS1.1

Compare expression of checked genes

Potri.001G240500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.