Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13790 228 / 3e-67 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT3G48670 218 / 5e-64 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT4G01180 196 / 8e-57 XH/XS domain-containing protein (.1) AT5G59390 196 / 2e-56 XH/XS domain-containing protein (.1) AT3G12550 194 / 2e-55 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G80790 152 / 2e-40 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT1G15910 148 / 9e-39 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 145 / 9e-38 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT4G01780 74 / 7e-14 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184800 [exp] 449 / 5e-153 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 260 / 3e-79 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.003G181000 [exp] 162 / 6e-44 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032933 [exp] 266 / 1e-84 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10000951 [exp] 249 / 7e-76 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002702 [exp] 248 / 1e-75 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000949 [exp] 193 / 5e-55 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 188 / 4e-53 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002703 [exp] 184 / 4e-51 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10009217 [exp] 176 / 1e-48 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 161 / 3e-43 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037987 [exp] 144 / 5e-37 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10000950 [exp] 74 / 5e-14 AT3G12550 159 / 3e-42 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain CL0221 [poplar] [flax] PF03470 [poplar] [flax] zf-XS XS zinc finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G240666.2 pacid=42789673 polypeptide=Potri.001G240666.2.p locus=Potri.001G240666 ID=Potri.001G240666.2.v4.1 annot-version=v4.1 ATGATGTCTTATAAATCAGAAGAAAGGGACATAAGCGATTCCGAGTTTCAAGAAGAGTATGAGCTCAGGAAGTATGAATATTTGAAGAGGGAAAGAATTA GAGTGTTAAATTCAGTTTATGGATGTCCCTACTGTATTGGGAAGAGATATTACCATCCGAAGGAGCTTCCCCAACATGCTTCTAACCTTGATAGAGGCTC ACAAAGGAGGACTAGAGGAGAGCAAGCTCGACACCGAGCTCTTGAGAGGTATGTTCGGAGGTATCTTTGTGTGGAGGATAGCTCGGAGCCCTCTACCACA ACTGAATCTCCTGCTGTATGTGACCGTGATAGGGAGCGGCTGTTTGTTTGGCCTTGGATGGGGGTTGTTGCTAATATTCCTACTCAGGTGAAGGATGGAC GTCGTGTTGGGGAAAGTGGCTCAAAACTCAGGCATGAGTTAGCAACAAAAGGGTTTGATCCAGTTACGGTGCATCCTTTGTGGAGCTGCTTTGGTCATTC AGGGTTAGCTGTTGTGGAATTCAAGAAAGACTGGGACGGCTTCAATAACGCTATTATGTTTGAGAAGGATTTTGATTTGAATCATTGTGGGAAGAAGGAT TATGTTACAATTCTAGAGAGAGATCGAGGGCAGAGATTATACGGATGGATTGCTCGAGATGATGACTACAAGGCCAATGGTCTCTTAGGAGAGCATCTCA GAAAGAATGGGGATTTAAAAACTGTATGTGGAAAAGAAGCAGAGGATCAAAGGAAGGATGCCAAGCTACTTTGCAACTTGACCAGCACCTTAAAAGAGAA GTACGACCACCTTAGAGAAATGGAGATCAGATATGAGGAGACTACTCAATCCTTGATCAAGGTGATGGACCAAAAGGATTCTATGGTCAAGTCTTACAAT GAAGAGATAAGAAAAATGCAGCAGATTGCACATGACCATTTTGCGAAGATCTCTTTAGAGCATGAAAAGGCCACGCAGCAATTACTAGCTAAGAGAGAAG AGCTAGTGCAGTGTGAGAAAAAACTGCAGCAACGTGAGGTGCAAATTGAAAATGAGAGGTCGAAGCTTCTCCTTGAGAAGAAAATGGTAACACACTTTGG CTTTCTTAAAGCTGTCAATTTCCAGCTGTGCTGGGAATTTTGCAAGATGACTGAAATTGATAGATCTAAGCCAGATATCAAAGAGTTCTATATTAACATT CATTTGTCAGCCTATAAATCCACATCTAAGTTGGTCCAACATCAGTCAAGATATAATGTTTGTGATGTTTTAGCAGATATTTCAATTTTGGAAGGCAAAG ACCAAAGCTACTCATTTGAACATCTCTGA
AA sequence Show only first row Show all	>Potri.001G240666.2 pacid=42789673 polypeptide=Potri.001G240666.2.p locus=Potri.001G240666 ID=Potri.001G240666.2.v4.1 annot-version=v4.1 MMSYKSEERDISDSEFQEEYELRKYEYLKRERIRVLNSVYGCPYCIGKRYYHPKELPQHASNLDRGSQRRTRGEQARHRALERYVRRYLCVEDSSEPSTT TESPAVCDRDRERLFVWPWMGVVANIPTQVKDGRRVGESGSKLRHELATKGFDPVTVHPLWSCFGHSGLAVVEFKKDWDGFNNAIMFEKDFDLNHCGKKD YVTILERDRGQRLYGWIARDDDYKANGLLGEHLRKNGDLKTVCGKEAEDQRKDAKLLCNLTSTLKEKYDHLREMEIRYEETTQSLIKVMDQKDSMVKSYN EEIRKMQQIAHDHFAKISLEHEKATQQLLAKREELVQCEKKLQQREVQIENERSKLLLEKKMVTHFGFLKAVNFQLCWEFCKMTEIDRSKPDIKEFYINI HLSAYKSTSKLVQHQSRYNVCDVLADISILEGKDQSYSFEHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.001G240666 [exp]	0	1
					Potri.010G210600 [exp]	10.48	0.7528
AT5G15700			DNA/RNA polymerases superfamil...		Potri.017G105801 [exp]	22.91	0.6755
AT5G05800			unknown protein		Potri.010G132850 [exp]	29.39	0.6533
AT2G42040			unknown protein		Potri.016G058000 [exp]	31.24	0.7047
					Potri.007G062642 [exp]	33.70	0.6125
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.002G007150 [exp]	37.10	0.6734
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Potri.011G025800 [exp]	39.37	0.7034
AT5G47020			unknown protein		Potri.001G148300 [exp]	42.42	0.7010
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.001G165480 [exp]	46.20	0.6664
					Potri.018G104600 [exp]	48.98	0.6943

Compare expression of checked genes

Potri.001G240666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.