Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EXPA6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39700 449 / 6e-162 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G28950 439 / 8e-158 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT2G37640 434 / 8e-156 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 431 / 6e-155 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 422 / 2e-151 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT1G69530 353 / 3e-124 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 349 / 1e-122 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G56320 346 / 2e-121 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 342 / 1e-119 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G05290 340 / 4e-119 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031800 [exp] 512 / 0 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.010G202500 [exp] 464 / 5e-168 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.008G057100 [exp] 456 / 7e-165 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.006G086100 [exp] 438 / 1e-157 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.006G108000 [exp] 368 / 7e-130 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.016G135200 [exp] 365 / 1e-128 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.019G057500 [exp] 358 / 2e-126 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.008G088300 [exp] 355 / 1e-124 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 351 / 5e-123 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016533 [exp] 471 / 2e-170 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040801 [exp] 469 / 6e-170 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10040286 [exp] 454 / 6e-164 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 452 / 3e-163 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10024388 [exp] 431 / 1e-154 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10010841 [exp] 377 / 8e-129 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10036763 [exp] 358 / 8e-126 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 355 / 7e-125 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 352 / 1e-123 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10042214 [exp] 347 / 2e-121 AT2G40610 393 / 7e-140 expansin A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.001G240900.1 pacid=42787567 polypeptide=Potri.001G240900.1.p locus=Potri.001G240900 ID=Potri.001G240900.1.v4.1 annot-version=v4.1 ATGGCAATGAGCAGTTTAATTTGCATTGCCACTAGTCTACTAATAATAATGTCATCGTTGTGGATGGCTGAAGCTAGAATTCCTGGTGTTTACTCTGGGG GTGCTTGGCAAAATGCTCATGCAACCTTCTATGGCGGTGCTGATGCCTCTGGCACAATGGGAGGAGCTTGTGGATATGGAAATCTGTACAGCCAAGGGTA TGGAGTGAGCACTGCAGCACTAAGCACAGCACTGTTCAACAACGGGTTAACTTGCGGTTCTTGCTTCGAGATAAAATGTGCAAGTGACCCAAGATGGTGC CACTCAGGCAGCCCATCTATTTTCATCACTGCAACCAACTTTTGCCCTCCAAATTATGCACTTCCTAGTGACAATGGAGGCTGGTGCAACCCTCCTCGCC CCCACTTTGACCTTGCCATGCCCATGTTCCTTAAGATCGCCGAGTATCGTGCCGGTATCGTCCCTGTTGCCTACCGCCGAGTGCCATGCCGCAAGAGGGG AGGCATAAGGTTCACCATAAACGGATTCCGTTACTTCAACTTGGTATTGATCAGCAACGTGGCGGGTGCAGGGGATATAGTGCAGGTGAGCGTGAAGGGT TCAAAGACTGGTTGGATGAGCATGAGCCGTAACTGGGGCCAAAACTGGCAGTCAAACGCTGTTCTGGTTGGGCAGTCACTCTCCTTCAGGGTCAGGGCCA GTGACAGACGCTCCTCCACTTCATGGAACATTGCCCCAGCCCACTGGCAGTTTGGTCAAACTTTTACCGGCAAGAATTTCAGGGTCTAA
AA sequence Show only first row Show all	>Potri.001G240900.1 pacid=42787567 polypeptide=Potri.001G240900.1.p locus=Potri.001G240900 ID=Potri.001G240900.1.v4.1 annot-version=v4.1 MAMSSLICIATSLLIIMSSLWMAEARIPGVYSGGAWQNAHATFYGGADASGTMGGACGYGNLYSQGYGVSTAALSTALFNNGLTCGSCFEIKCASDPRWC HSGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTINGFRYFNLVLISNVAGAGDIVQVSVKG SKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVRASDRRSSTSWNIAPAHWQFGQTFTGKNFRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.001G240900 [exp]	0	1	Pt-EXPA6.2
AT5G01090			Concanavalin A-like lectin fam...		Potri.010G194700 [exp]	2.44	0.8914
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Potri.008G020900 [exp]	5.19	0.9064
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	5.38	0.9114
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	5.47	0.9087
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.013G025900 [exp]	9.48	0.8825
AT3G04860			Plant protein of unknown funct...		Potri.013G036400 [exp]	12.80	0.8144
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.017G088600 [exp]	13.41	0.8953
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.012G139800 [exp]	13.85	0.8612
AT3G61920			unknown protein		Potri.001G089000 [exp]	15.96	0.8130
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.009G031800 [exp]	16.43	0.8454	Pt-EXPA6.1,PtrEXPA5

Compare expression of checked genes

Potri.001G240900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.