Plant FIBer expression Database

Potri.001G240904 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04340 80 / 2e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G169500
[exp]
86 / 5e-23 AT2G04340 215 / 3e-72 unknown protein
Potri.014G169750
[exp]
64 / 2e-14 AT2G04340 135 / 4e-41 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019098
[exp]
57 / 5e-11 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G240904.1 pacid=42790241 polypeptide=Potri.001G240904.1.p locus=Potri.001G240904 ID=Potri.001G240904.1.v4.1 annot-version=v4.1
ATGCTTACTTGCGAGGAATGGGAGGAGTTCAGAGAAGTGAGGTCTAGGACTCCTTTTGAATCCAAGCTTGCTCGTTCTAATGCACGCAGAAGAACAGAAG
AACCGGTGCGCATGGAAGACTTGAAGGGTTGGACAATAGATGTGCTCAACCGTCAATTACATGGAACACCCTCCTTACGCCTCGTCTATTACTGTGACAA
TTACGATGCCCAGTGTATATGA
AA sequence
>Potri.001G240904.1 pacid=42790241 polypeptide=Potri.001G240904.1.p locus=Potri.001G240904 ID=Potri.001G240904.1.v4.1 annot-version=v4.1
MLTCEEWEEFREVRSRTPFESKLARSNARRRTEEPVRMEDLKGWTIDVLNRQLHGTPSLRLVYYCDNYDAQCI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G04340 unknown protein Potri.001G240904
[exp]
0 1
AT1G76065 LYR family of Fe/S cluster bio... Potri.014G181400
[exp]
2.82 0.8885
AT5G64390 HEN4 HUA ENHANCER 4, RNA-binding KH... Potri.007G116300
[exp]
6.00 0.8660
AT3G17900 unknown protein Potri.008G194632
[exp]
6.48 0.8527
AT3G56250 unknown protein Potri.013G083700
[exp]
6.48 0.8734
AT4G01710 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa... Potri.002G136500
[exp]
7.48 0.8499 CRK.2
AT2G45200 ATGOS12, GOS12 golgi snare 12 (.1.2) Potri.002G145200
[exp]
8.48 0.8367
AT4G18060 SH3 domain-containing protein ... Potri.011G077500
[exp]
10.00 0.8591
AT1G72480 Lung seven transmembrane recep... Potri.001G166500
[exp]
10.95 0.8380
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G257300
[exp]
12.24 0.8188
AT3G08710 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredo... Potri.016G138800
[exp]
12.72 0.8161

Potri.001G240904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.