Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04340 96 / 2e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169500 [exp] 120 / 4e-36 AT2G04340 215 / 3e-72 unknown protein Potri.014G169750 [exp] 61 / 3e-13 AT2G04340 135 / 4e-41 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019098 [exp] 109 / 2e-29 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G241100.1 pacid=42790279 polypeptide=Potri.001G241100.1.p locus=Potri.001G241100 ID=Potri.001G241100.1.v4.1 annot-version=v4.1 ATGTCATGTAGGAGACAATTGCATACAACAGTGTCTCATGATGGTCCCACGGAAACATTGAAGAGAATAATCATGGAATTGGAGAAAACGAGGTCAAAGA AGAACTCTAAAAAAAGGGACGACATTTTTGTCCAGGTCCCAGAATCCATGTCATTTCTTGACACTGCAACTATGCCTATGATTCTCACTGTTGTTGGAAC TGCACCCTTTGCAAAGCTACTCATGATGTATGACGATTCACACTCGCAAGAAATGATGGAAGCACAAAATTAA
AA sequence Show only first row Show all	>Potri.001G241100.1 pacid=42790279 polypeptide=Potri.001G241100.1.p locus=Potri.001G241100 ID=Potri.001G241100.1.v4.1 annot-version=v4.1 MSCRRQLHTTVSHDGPTETLKRIIMELEKTRSKKNSKKRDDIFVQVPESMSFLDTATMPMILTVVGTAPFAKLLMMYDDSHSQEMMEAQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04340			unknown protein		Potri.001G241100 [exp]	0	1
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G433800 [exp]	4.89	0.5850
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	11.48	0.5926	HYP1.1
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	18.33	0.5672
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Potri.001G222700 [exp]	24.69	0.5978	FUS12.2
AT4G16420		PRZ1, ADA2B	PROPORZ1, homolog of yeast ADA...		Potri.016G007600 [exp]	32.37	0.6137
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.001G096100 [exp]	36.20	0.5534
					Potri.001G456100 [exp]	52.39	0.4664
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	54.99	0.5574	ORG4.2
AT3G11920			glutaredoxin-related (.1)		Potri.008G144800 [exp]	86.71	0.4899
AT2G19320			unknown protein		Potri.006G073300 [exp]	88.79	0.4859

Compare expression of checked genes

Potri.001G241100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.