Plant FIBer expression Database

Potri.001G241250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G241250.1 pacid=42790058 polypeptide=Potri.001G241250.1.p locus=Potri.001G241250 ID=Potri.001G241250.1.v4.1 annot-version=v4.1
ATGTTTATCCTTCACCTTTTGCTTTCTCTCCATTATCAATGCCATCCTTCAAATATTCTCTCATTTTCACCTCTAACAACTAGAATATCTTCTTCAATAA
GCTTCTCTGCCTTATCTTTCGCCTCATTTTCAATGCTTTCTTCATTCATCAATCCATTGTCATCCTCTTCATTATTCACCTCTCCATTGGGAGGTTCTAT
CTCATCTTTACCTGCATTAACTACATTCGTTTTTTTTTGTAAGATCTTCCTTCTATTCACAACCAAGAATCAAAGTTGTTCCTTCTGCATTCATCTGAGC
TGTCTATACACGTCAGAAAAGGAGATGAGCCTTGGTTCTTTTCTAACAGCTTGGGGAGCTTCTCTTGTGGGCTATGGGAACTCTGGAGGCAAAGTGCTAT
GGCAGTGCAAAAATTCAGTGACCTGA
AA sequence
>Potri.001G241250.1 pacid=42790058 polypeptide=Potri.001G241250.1.p locus=Potri.001G241250 ID=Potri.001G241250.1.v4.1 annot-version=v4.1
MFILHLLLSLHYQCHPSNILSFSPLTTRISSSISFSALSFASFSMLSSFINPLSSSSLFTSPLGGSISSLPALTTFVFFCKIFLLFTTKNQSCSFCIHLS
CLYTSEKEMSLGSFLTAWGASLVGYGNSGGKVLWQCKNSVT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G241250
[exp]
0 1
AT5G63530 ATFP3 ARABIDOPSIS THALIANA FARNESYLA... Potri.012G101400
[exp]
6.32 0.7591
AT2G13370 CHR5 chromatin remodeling 5 (.1) Potri.009G047800
[exp]
7.93 0.8103
AT2G13370 CHR5 chromatin remodeling 5 (.1) Potri.001G253400
[exp]
11.48 0.7932
AT4G21430 B160 Zinc finger, RING-type;Transcr... Potri.011G041400
[exp]
13.52 0.7728
Potri.010G004750
[exp]
17.54 0.6229
AT4G12780 Chaperone DnaJ-domain superfam... Potri.014G197600
[exp]
18.33 0.7310
AT4G15180 SDG2, ATXR3 SET domain protein 2 (.1) Potri.017G041100
[exp]
22.89 0.7665
ATCG00870 ATCG00870.1, OR... Protein precursor Ycf15, putat... Potri.013G000766
[exp]
23.87 0.6041
AT2G16940 Splicing factor, CC1-like (.1.... Potri.004G177000
[exp]
27.36 0.7578
AT4G20740 EMB3131 EMBRYO DEFECTIVE 3131, Pentatr... Potri.003G203100
[exp]
28.14 0.7336

Potri.001G241250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.