Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29050 442 / 5e-155 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 342 / 5e-116 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 316 / 1e-106 ATRBL2 RHOMBOID-like 2 (.1) AT5G07250 302 / 9e-101 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 293 / 5e-98 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G52580 254 / 9e-83 ATRBL5 RHOMBOID-like protein 5 (.1) AT4G23070 250 / 5e-81 ATRBL7 RHOMBOID-like protein 7 (.1) AT1G77860 198 / 2e-60 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT5G38510 46 / 3e-05 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G25290 42 / 0.0005 ATRBL10 RHOMBOID-like protein 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G031900 [exp] 573 / 0 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.006G086300 [exp] 421 / 1e-146 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 367 / 1e-126 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 358 / 5e-123 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 334 / 2e-113 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 315 / 7e-106 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.002G090400 [exp] 227 / 1e-70 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Potri.017G112900 [exp] 49 / 5e-06 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004965 [exp] 424 / 2e-148 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10023789 [exp] 406 / 4e-141 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 402 / 8e-135 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10005464 [exp] 387 / 1e-133 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10024497 [exp] 362 / 9e-125 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 359 / 1e-123 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 286 / 8e-94 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10028036 [exp] 224 / 8e-70 AT1G77860 323 / 1e-108 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10003743 [exp] 224 / 1e-69 AT1G77860 333 / 1e-112 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) Lus10023145 [exp] 47 / 1e-05 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.001G241300.1 pacid=42793282 polypeptide=Potri.001G241300.1.p locus=Potri.001G241300 ID=Potri.001G241300.1.v4.1 annot-version=v4.1 ATGATGGGGAGGGAGGGCGCAGGGAACGACATTGTGGAGATTAAGGTACATCCAAGGCGGGAAAACAATGTAGGCTCACCACCACCGTACCAGAACAAAG CTGTTTTCAAGAAATGGGTGCCATGGCTTGTCCCCTTATTTGTGGTTTCTAACATTGCTGTCTTTATTGCTGTCATGTATGTCAATGATTGCCCCACCAA TTCTGGCTCTTGTGTTGCTCCTTCTTTGGGCAGATTCTCCTTTCAGCCTCTCAAAGAAAATCCCCTTCTTGGCCCCTCCTCTTCAACTTTGGTGAAGATG GGAGCTCTTGACGTGGCTAGAGTGGTGAATAAGCACCAGAGTTGGCGTCTCATTTCTTGCATATGGCTACATGCTGGAGTCTTCCATGTGGTTGCCAACA TGTTGAGTCTCCTCCTAATTGGAATTCGTCTTGAGCAAGAATTTGGGTTCTTTCGAATTGGGTTGGTCTATGTCATTTCTGGCTTTGGTGGGAGTTTGTT GTCGGCTTTGTTTATTCAGACAGGTATATCTGTTGGTGCCTCCGGTGCACTGTTTGGTTTACTAGGAGGCATGCTTTCAGAGCTGATTACGAACTGGACC ATATACGCAAATAAGTCAGCAGCACTGACAACTCTCCTTTGCATCATTGCAATAAATCTAGCGGTTGGACTCCTCCCACATGTGGACAACTATGCTCATA TTGGAGGATTTCTCTCTGGCTTTTTTCTGGGCTTTGTGTTCTTAATTCGCCCCCAGTTTAAGTGGATCAACCAAAAAGCATGTCCTCCAGGATACATTGC ACCCCCAGCTAAATCTAAACACAAGGCGTACCAATATGTACTGTGGGTTGTATCTCTGATAGTAATCATCATTGGATTTACTCTTGGGATGGTTGCACTC CTTCGAGGAGTTAATGTGAATGATCATTGTTCATGGTGTCATTACTTGAGCTGCGTTCCTACTTCATTATGGAGCTGCAATTCTCGGCAAGTTTATTGTC AGTCGTCTCAACTTGGAAATCAACTGAACTTGACGTGCTTGAGCAATGGGAAAAGCAACCTGTATTATTTGTCTGCTGACGACCTGTCCAAGGTTCAGCA GTTGTGCGCTCAGCTTTGCAGTTGA
AA sequence Show only first row Show all	>Potri.001G241300.1 pacid=42793282 polypeptide=Potri.001G241300.1.p locus=Potri.001G241300 ID=Potri.001G241300.1.v4.1 annot-version=v4.1 MMGREGAGNDIVEIKVHPRRENNVGSPPPYQNKAVFKKWVPWLVPLFVVSNIAVFIAVMYVNDCPTNSGSCVAPSLGRFSFQPLKENPLLGPSSSTLVKM GALDVARVVNKHQSWRLISCIWLHAGVFHVVANMLSLLLIGIRLEQEFGFFRIGLVYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELITNWT IYANKSAALTTLLCIIAINLAVGLLPHVDNYAHIGGFLSGFFLGFVFLIRPQFKWINQKACPPGYIAPPAKSKHKAYQYVLWVVSLIVIIIGFTLGMVAL LRGVNVNDHCSWCHYLSCVPTSLWSCNSRQVYCQSSQLGNQLNLTCLSNGKSNLYYLSADDLSKVQQLCAQLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	0	1
AT5G62710			Leucine-rich repeat protein ki...		Potri.012G071100 [exp]	1.00	0.9572
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	1.41	0.9425
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	2.23	0.9193
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	2.44	0.9276
AT5G26330			Cupredoxin superfamily protein...		Potri.008G151000 [exp]	4.24	0.9118
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	4.47	0.9213
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	6.24	0.8898
AT3G56750			unknown protein		Potri.006G040400 [exp]	11.31	0.9007
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	12.96	0.9106
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.012G118100 [exp]	17.66	0.8604

Compare expression of checked genes

Potri.001G241300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.