Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59400 357 / 4e-124 unknown protein AT4G11960 74 / 6e-15 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2) AT4G22890 71 / 5e-14 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032300 [exp] 526 / 0 AT5G59400 343 / 8e-119 unknown protein Potri.003G119200 [exp] 75 / 3e-15 AT4G22890 410 / 1e-144 PGR5-LIKE A (.1.2.3.4.5) Potri.001G113000 [exp] 70 / 2e-13 AT4G22890 392 / 4e-137 PGR5-LIKE A (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040799 [exp] 401 / 1e-141 AT5G59400 316 / 3e-108 unknown protein Lus10016531 [exp] 398 / 1e-140 AT5G59400 311 / 2e-106 unknown protein Lus10014135 [exp] 72 / 3e-14 AT4G22890 465 / 3e-166 PGR5-LIKE A (.1.2.3.4.5) Lus10006710 [exp] 69 / 5e-13 AT4G22890 468 / 2e-167 PGR5-LIKE A (.1.2.3.4.5)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G241400.1 pacid=42790874 polypeptide=Potri.001G241400.1.p locus=Potri.001G241400 ID=Potri.001G241400.1.v4.1 annot-version=v4.1 ATGGCAGGCACGTGCACATTCATCTCTCGTCACGTGATCGAACTATCATCGAAAAACAGAGCTAGCAGAACTTGGGGTGGAGGTGGGGGTGCTTCATTTT GTTGGCCTCGCATCTCTGCGATGAATAGCAATGGAGTGTCTAGTACACGCGAGGTTGCACTTTCACCGGAAGGACCGTCTTGCATATTCGTTGGCCCAAT CGAGACTGCAAGCCAAGATACCCTTGAAGCTCTCTATTGTCAAGCACGGGATGCATATTACAGTGGTAAACCTTTGATAGTAGATGACATGTTTGATAGA GTTGAGTTAAAATTGCGGTGGTATGGTTCCAAATCTGTTGTCAAGTACCCTCGCTGCAGTCTTAGACGACAGTCCACTTACTCTGATGCTGAGGAAGATA TATCACAGGCATTTGCACTAGCAAGCATTTGGGTCCTCTTTCTTACAATTGGCAGTTCAGCGTGTGCTTTTCCCATAATCTACACAGTTGGCCTAGCTTA CCAAGATGCATTTGGCTCAGGGATAGCCCATGGCAGCCAGGCACCTATAATTGGGTTTCTTGCTACGGTTAATGGTATTCTATTTATGGCAGTGGGTTCT TTGATCGGCTATCCAATTGCATCGGCTTCAGTCAAGGTGCTACAAGGCCTTTGGAGGAATGACTTGGTGGCACTCAAGGGAGCATGCCCAAATTGTGGTG AGGAGGTATTTGCCTTTGTGAAATCAGATCAATCTAACGACTCCCCACATAGAGCAGATTGTCATGTATGTGAAAGTTTACTTGAATTCCGCACCAAGGT TGAGCAAACCACTTCGAGAGTAGGTAGACAGTGGGTGTATGGGCGCATATACCTGGTATCGCGAAGACGTCAGAGATGGAAGTAA
AA sequence Show only first row Show all	>Potri.001G241400.1 pacid=42790874 polypeptide=Potri.001G241400.1.p locus=Potri.001G241400 ID=Potri.001G241400.1.v4.1 annot-version=v4.1 MAGTCTFISRHVIELSSKNRASRTWGGGGGASFCWPRISAMNSNGVSSTREVALSPEGPSCIFVGPIETASQDTLEALYCQARDAYYSGKPLIVDDMFDR VELKLRWYGSKSVVKYPRCSLRRQSTYSDAEEDISQAFALASIWVLFLTIGSSACAFPIIYTVGLAYQDAFGSGIAHGSQAPIIGFLATVNGILFMAVGS LIGYPIASASVKVLQGLWRNDLVALKGACPNCGEEVFAFVKSDQSNDSPHRADCHVCESLLEFRTKVEQTTSRVGRQWVYGRIYLVSRRRQRWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59400			unknown protein		Potri.001G241400 [exp]	0	1
AT5G42770			Maf-like protein (.1.2)		Potri.014G196400 [exp]	4.47	0.8832
AT4G01935			unknown protein		Potri.014G117500 [exp]	4.79	0.9143
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Potri.002G072400 [exp]	5.09	0.9011
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G070700 [exp]	7.34	0.8715
AT1G17100			SOUL heme-binding family prote...		Potri.001G067100 [exp]	8.94	0.8480
AT5G20130			unknown protein		Potri.016G013500 [exp]	13.03	0.8613
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.001G340800 [exp]	13.96	0.8731
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	18.97	0.8651
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	28.72	0.8184
AT1G16080			unknown protein		Potri.003G185901 [exp]	30.75	0.8606

Compare expression of checked genes

Potri.001G241400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.