Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59410 189 / 4e-63 Rab5-interacting family protein (.1) AT2G29020 154 / 2e-49 Rab5-interacting family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032100 [exp] 205 / 1e-69 AT5G59410 155 / 7e-50 Rab5-interacting family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040798 [exp] 182 / 2e-60 AT5G59410 202 / 2e-68 Rab5-interacting family protein (.1) Lus10016530 [exp] 139 / 1e-43 AT5G59410 154 / 1e-49 Rab5-interacting family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07019 [poplar] [flax] Rab5ip Rab5-interacting protein (Rab5ip)
Representative CDS sequence Show only first row Show all	>Potri.001G241500.1 pacid=42789251 polypeptide=Potri.001G241500.1.p locus=Potri.001G241500 ID=Potri.001G241500.1.v4.1 annot-version=v4.1 ATGAAGGAAGGGAAATCCTCTGCTAAATTGAACAACAACAACAATCAACAGCAGCAGCACCAAAATGGTCACTTGTCTCCTTTCAAACTCGCCAAATTGT TGGATCCTGAAGCCTCTTGGGATAAGGATCAATTGGGAGATGTGTTGCATTGGATTAGGCAAGTCGTCGCCCTCGTTTGCGGATTACTATGGGGTGCCAT CCCTTTGGTCGGCGGTATTTGGATCGCCCTTTTTCTGTTGATATCCTCTGGGATTATATATGTTTATTATGGGATGATATTAAAGATCGACGAGGATGAT TTTGGTGGTCATGGAACTCTACTCCAAGAGGGGCTCTTTGCTTCTATCACTCTATTTCTGCTATCGTGGATTCTAATGTACAGCTTGGCCCACTTCTGA
AA sequence Show only first row Show all	>Potri.001G241500.1 pacid=42789251 polypeptide=Potri.001G241500.1.p locus=Potri.001G241500 ID=Potri.001G241500.1.v4.1 annot-version=v4.1 MKEGKSSAKLNNNNNQQQQHQNGHLSPFKLAKLLDPEASWDKDQLGDVLHWIRQVVALVCGLLWGAIPLVGGIWIALFLLISSGIIYVYYGMILKIDEDD FGGHGTLLQEGLFASITLFLLSWILMYSLAHF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	0	1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	1.41	0.9615
AT1G76400			Ribophorin I (.1)		Potri.002G006600 [exp]	1.41	0.9573
AT1G13730			Nuclear transport factor 2 (NT...		Potri.010G157800 [exp]	2.82	0.9453
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	3.87	0.9562
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	4.47	0.9408
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.001G210900 [exp]	5.00	0.9453
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.017G136950 [exp]	6.16	0.9351
AT1G65270			unknown protein		Potri.019G055100 [exp]	7.14	0.9370
AT1G50670			OTU-like cysteine protease fam...		Potri.011G139500 [exp]	8.30	0.9329
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036732 [exp]	9.16	0.9444

Compare expression of checked genes

Potri.001G241500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.