Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07540 375 / 5e-121 MYB TRFL2 TRF-like 2 (.1) AT5G13820 331 / 8e-104 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT3G46590 311 / 2e-97 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT3G12560 297 / 4e-91 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G59430 278 / 1e-84 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 145 / 5e-38 MYB TRFL4 TRF-like 4 (.1) AT1G72650 45 / 0.0001 MYB TRFL6 TRF-like 6 (.1.2) AT1G17460 45 / 0.0001 MYB TRFL3 TRF-like 3 (.1.2) AT2G37025 43 / 0.0007 TRFL8 TRF-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032000 [exp] 1048 / 0 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.010G202400 [exp] 491 / 2e-164 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.008G057300 [exp] 486 / 9e-163 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.006G086500 [exp] 417 / 3e-136 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.003G063700 [exp] 48 / 2e-05 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.001G170200 [exp] 45 / 0.0001 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 44 / 0.0004 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016527 [exp] 540 / 0 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10040795 [exp] 528 / 6e-180 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10002704 [exp] 417 / 3e-136 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 406 / 5e-132 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040285 [exp] 400 / 7e-130 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 322 / 3e-100 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10024385 [exp] 303 / 9e-93 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10010844 [exp] 282 / 6e-85 AT1G07540 308 / 7e-97 TRF-like 2 (.1) Lus10013809 [exp] 48 / 3e-06 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10026522 [exp] 47 / 3e-05 AT2G37025 97 / 2e-21 TRF-like 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G241600.1 pacid=42788388 polypeptide=Potri.001G241600.1.p locus=Potri.001G241600 ID=Potri.001G241600.1.v4.1 annot-version=v4.1 ATGGTGTTGCAGAAGAGATTAGATTACGGATTCAATGGCTATCAGGTTCCTCACATGCCCCGAGCTACCAGATCAGCTAGGAGGAGGCGTTCCTTTAAGA AGAAACATGAAGAGAATCAGATGTGTGCATTTGACTTATTGGCCATTGTAGCTGGAAAGTTATTGCTTGATAAAGAAAGTGCTCCCAGTTCTAGTAATAC ATCAGCGGACAAAGATCAGTGTGCAGTTGTTAATAGTGCTGTGAAATATGAATGGCAGGATGAAGAAAAACCTTTGAAAGTAGAAGCTTGTGATCAGGGA AGTGCTGCCAGGAATTTCTTTGTTTCTGATCTATCACAAGTTCATGGACAAGGTTGCAGTTCCAAAGAATCTCTTGTCATTCAGAATAACCTCAATTTAA GATTAGCTTCTGCACTAACAAAGTCAGACTGTGCAGGGAGGTCCAATGCTGAGAAGTTGAGAAATGACAAAAGCAAGAATGATATAGGTACTTTTGCCAG CAAAGTAGAGGGAGTTTCCTCCGAGTACAGAGAATTTGGTGACTGTAAATTAGAGGTTGAAACCAAAAGAGCAGTGAAAGATGAGCCTGGTAAGTCTGGG GTGGTGCTAAGCAGCACTGCGGCTAACATGTGCAGTTTAGAGGATCCTGTGGTTCTGGATGCAAAACCTCCTGCACTGGCCAGTTTGGACAGTTGTGCCA AGGTGCCTCTGTGTAGGAACCATATTCCCAATAGTTCTTATCCCACAAATCAGGATGATGTAAATGTAGTTAGTAGAGATGATGACGATAACTCCTCTGG GTGCACTCACCCTATCACCAAAAAAAAATTCTTTAGGCCAGCACCACGTATCGGAGATCGAAGAATCAGGAAAATTTTGGCTTCTAAATACTGGAAAGTA GCTCCAAAATTCAAGGATGCTACAGTTTCTAACTCTGATGGGGATTTGAAGCCTGTTTTCCACAAGAGGAAGAACTATTACAGACAACAAAGGTCTGAAA GGCTATATCCTTTCAAAAAAAGGAAGCACTATGCCTATAGTTCACCATCAAATCTTGACGGGGGACTAAGTTGCGAGTTTGTATCTGATTCACCTCGAAA GGGCAGCAATGGAGATGCTTCTGGTTCCTGTACAAGGATGCATGGAGTGACTGGGGCATCATCTTCATTTGTGGCTCAACACACTTCATTCCAACCCAGG GATTCTCATGGTATGAGAACCTTTAATGGAGGGGCATCATCTTCATTTGTGGGTCAACGCACTTCATTCCAACCTAGGGATTGTCACGTGAAGCTCAGGA TCAAGTCTTTCAGGGTGCCAGAGCTTCTTGTTGAGATTCCAGAAAGTTCAACTGTTGGCTTATTGAGGAGGACGGTAATGGAGGCTGTGACTGCTATACT TGGTGGTGGTTTACGTGTTGGTGTACTTCTTCAAGGAAAGAAGGTTAGGGACGACAACAAAACTTTATTGCAGACCGGGATTTCTCACAATAACCAGTTG GATTCTTTGGGTTTTTGCTTGGAGCCTAATCCTTCACAAACCCCCCCTTCTTTGTGTCCTGAAGATTCTCCCTTTCTACTTCAATGTGACACACCAGACC CTATAAGCAGGTGTCCTCCCACTGCTGGTGTGGTGTGTCAGGGCATTTGTACTGGTTCTCCAGAGCCCCATGCGAACAATTTAGGGAATTGTATTGAAAG TGACCATGATTCAGCATCCTCTCCTACTGACACTTCAATGGACAAAAGCACAAATTCAAAAGCGCTAGTCGCAGTACCAGCTATGAAAGTAGAGGCGCTA GCTGTGGTTCCAGCACACCAGAAATCCAAACAATCCGAGATTGTGCAGCGCCGAATTCGTCGACCTTTCTCCGTTGCTGAAGTTGAAGCATTGGTTCAAG CAGTTGAGAAACTTGGAACTGGAAGGTGGCGTGATGTTAAACTGCGAGCCTTTGATAATGCAAAGCATCGGACATATGTGGATTTGAAGGATAAATGGAA AACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGAGAGCCTGTTCCCCAGGAGCTCTTAGACAGGGTCTTAACTGCCCATGCTTACTGG TCCCAGCAGCAAGCCGACCAACAGTTCAAACACCAGCATGCAGAGACTTGCCTTCTCCTCTGA
AA sequence Show only first row Show all	>Potri.001G241600.1 pacid=42788388 polypeptide=Potri.001G241600.1.p locus=Potri.001G241600 ID=Potri.001G241600.1.v4.1 annot-version=v4.1 MVLQKRLDYGFNGYQVPHMPRATRSARRRRSFKKKHEENQMCAFDLLAIVAGKLLLDKESAPSSSNTSADKDQCAVVNSAVKYEWQDEEKPLKVEACDQG SAARNFFVSDLSQVHGQGCSSKESLVIQNNLNLRLASALTKSDCAGRSNAEKLRNDKSKNDIGTFASKVEGVSSEYREFGDCKLEVETKRAVKDEPGKSG VVLSSTAANMCSLEDPVVLDAKPPALASLDSCAKVPLCRNHIPNSSYPTNQDDVNVVSRDDDDNSSGCTHPITKKKFFRPAPRIGDRRIRKILASKYWKV APKFKDATVSNSDGDLKPVFHKRKNYYRQQRSERLYPFKKRKHYAYSSPSNLDGGLSCEFVSDSPRKGSNGDASGSCTRMHGVTGASSSFVAQHTSFQPR DSHGMRTFNGGASSSFVGQRTSFQPRDCHVKLRIKSFRVPELLVEIPESSTVGLLRRTVMEAVTAILGGGLRVGVLLQGKKVRDDNKTLLQTGISHNNQL DSLGFCLEPNPSQTPPSLCPEDSPFLLQCDTPDPISRCPPTAGVVCQGICTGSPEPHANNLGNCIESDHDSASSPTDTSMDKSTNSKALVAVPAMKVEAL AVVPAHQKSKQSEIVQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYW SQQQADQQFKHQHAETCLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	0	1
AT5G43100			Eukaryotic aspartyl protease f...		Potri.014G020200 [exp]	1.00	0.7736
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G130800 [exp]	3.46	0.7434
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Potri.001G206700 [exp]	8.83	0.7001
AT5G57710			Double Clp-N motif-containing ...		Potri.006G175200 [exp]	10.48	0.7145
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036532 [exp]	10.67	0.7625
AT1G60995			unknown protein		Potri.001G211700 [exp]	10.95	0.7180
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.006G000800 [exp]	15.87	0.7180
AT2G40270			Protein kinase family protein ...		Potri.008G072100 [exp]	16.73	0.6990
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020600 [exp]	24.37	0.6285
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	24.49	0.6974

Compare expression of checked genes

Potri.001G241600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.