Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29070 403 / 4e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G21270 378 / 4e-132 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G38930 369 / 1e-128 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G15420 106 / 2e-25 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163200 [exp] 404 / 2e-142 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 401 / 4e-141 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.014G156300 [exp] 102 / 7e-24 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018057 [exp] 398 / 4e-139 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 362 / 2e-125 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 361 / 7e-125 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 279 / 4e-93 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 188 / 3e-56 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10031538 [exp] 112 / 1e-27 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 111 / 4e-27 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [poplar] [flax] Cdc48_2-like PF03152 [poplar] [flax] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Potri.001G242200.1 pacid=42790466 polypeptide=Potri.001G242200.1.p locus=Potri.001G242200 ID=Potri.001G242200.1.v4.1 annot-version=v4.1 ATGGATCGCCAAGACCACCACAGTTCATCATTTGAACAGAGTTACCGCTGCTACCCTGTCTCTTTCATTGATAAGGCACATCTGGAAAAGGGGGATAAAA TTATTATGCCTCCCTCAGCTCTTGATCGCCTTGCAACCTTGCACATTGACTATCCAATGCTTTTTGAACTCCATAATCCTTCTGCTGGACGTACTTCTCA TTGTGGGGTTCTAGAATTTATTGCAGATGAGGGCATGATATACTTGCCCTACTGGATGATGGAGAACATGCTGCTACAAGAGGGGGACATTGTGCAATTG AGAAATACCAGCCTGGAAAAGGGAACTTTTGTGAAGCTGCAGCCCCACACCAAGGACTTCTTAGACATCTCCAATCCCAAAGCAATCTTGGAAACTTCAT TGAGGAACTACTCTTGTTTAACCACTGGTGATACAATAATGGTTGCCTATAACAACAAGAAGTACTACATTGATATAGTTGAAGCAAAACCCTCTTCTGC AATTAGTATTATTGAAACGGACTGTGAAGTGGATTTTGCCCCACCTCTTGATTATAAAGAACCTGAAAAACCAAAATCAATTCCTCGATCAAACAAGATA CCTCCTGAAGGTATGGAAGAGCCAGCCGCAAAGATGCCAAGGTTCAGTGCATTTACTGGTTCAGCAAGGCGCTTGGATGGCAAACCAGCGACACAACCAA CTGCATCCACTATCTGCCCTGCGTTGAAACAACACCAACCAGAAGCTGAGAACAATGGCTCCAAGTTATTAAGCTCCTTATCACATCAGCAGTCTGGAAA GCTTGTGTTTGGTTCTACGTCAAACCAACCCCAAAATGAAACACCAAAGGTTCCCTTAAAGAAAAGCACTCAGGAGCCTCCCCAGAAGGTGGAAGATCCG AAGTTTCAAGCTTTCACGGGGAAGAAGTATTCCCTAAAAGGCTGA
AA sequence Show only first row Show all	>Potri.001G242200.1 pacid=42790466 polypeptide=Potri.001G242200.1.p locus=Potri.001G242200 ID=Potri.001G242200.1.v4.1 annot-version=v4.1 MDRQDHHSSSFEQSYRCYPVSFIDKAHLEKGDKIIMPPSALDRLATLHIDYPMLFELHNPSAGRTSHCGVLEFIADEGMIYLPYWMMENMLLQEGDIVQL RNTSLEKGTFVKLQPHTKDFLDISNPKAILETSLRNYSCLTTGDTIMVAYNNKKYYIDIVEAKPSSAISIIETDCEVDFAPPLDYKEPEKPKSIPRSNKI PPEGMEEPAAKMPRFSAFTGSARRLDGKPATQPTASTICPALKQHQPEAENNGSKLLSSLSHQQSGKLVFGSTSNQPQNETPKVPLKKSTQEPPQKVEDP KFQAFTGKKYSLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29070			Ubiquitin fusion degradation U...		Potri.001G242200 [exp]	0	1
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Potri.001G072000 [exp]	11.83	0.7554	ERF1.6
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	16.09	0.8221
					Potri.001G077280 [exp]	28.98	0.8042
AT1G75400			RING/U-box superfamily protein...		Potri.018G119600 [exp]	53.06	0.7917
AT3G53990			Adenine nucleotide alpha hydro...		Potri.016G104600 [exp]	78.58	0.7694
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.001G167100 [exp]	120.31	0.7526	ALDH7.1
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.014G130900 [exp]	141.24	0.7315
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Potri.003G140900 [exp]	143.70	0.7132	RHD1.2
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.004G056366 [exp]	160.38	0.7415
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022500 [exp]	164.04	0.7417

Compare expression of checked genes

Potri.001G242200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.