Plant FIBer expression Database

Potri.001G242400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59500 451 / 4e-158 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G033700
[exp]
676 / 0 AT5G59500 439 / 1e-153 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001571
[exp]
443 / 7e-155 AT5G59500 410 / 3e-142 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
Lus10004974
[exp]
413 / 5e-143 AT5G59500 402 / 6e-139 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0115 Steroid_dh PF04191 PEMT Phospholipid methyltransferase
Representative CDS sequence
>Potri.001G242400.4 pacid=42793176 polypeptide=Potri.001G242400.4.p locus=Potri.001G242400 ID=Potri.001G242400.4.v4.1 annot-version=v4.1
ATGGAAACTACGTCAGTTCTCCTTCACTCTAAAACAATTCCTTTCAGTTTCACTATCTCTCATAACAACAGCAGAAAACTCTCTCTCAGGCATTCCAACA
AACAGTTTCAATCCCGTTTGTCAAATAACAATTTCCTCTTTGGTCAAAGCCTTAAACCCATCAAAAACCAAGCAGAACTTCCTTTTTCACTATATCAATC
AACTTCATCACTGAAAATTACAAGAACACACTTGTTATCTCCTCCCAAATGCTCACATTCCGGCTCTGCAAGCACAGACGGTTCTCAAAACCACCCATTT
TTAAAACCCTTCAAAAACCTCTCTCTTGATGAACTGAAAGCGACCCTTTTGCAATTAACCCCTATTGATATCATCAAGTGGTCAGGTATCTTATCAATTG
CAATTGCAGCCACAAAATGGACTGTGAATTTGGTCTTGAACCCGTTTTTCTGGATGTATTTTAGCTGGACATGGTTGTTTTGGCCGTGGTTTGTGGCTAT
ATTACTTGCTGTTTATGGATTATATTGCTTTTATAAGCATTCAATCGGCGAAGCTAGCATTTTTGAGCAATTTGCAATTGTTACATCAGTGTTCACTTGG
TTAACTCTAGTCCCTCCTGCCCATTTCAATGGATACCTACAAGGATGGCCTTTTGTGTTCTTTTTTGTGTATCATTATTTCTTTTTCTTCAATGTAAGTG
TGAGGAAACGTTTGTATGGTGATTATTATGCACGCCCGCATGACCCCAAGTGGGATTTACACCCACCCAGATGGTCTCGCCTTTTGTTCTGCGTTGGGGT
CATGGTTGGGCACTGGCTTGCAGCTTTAGAAGGTCCAGAGCTGCACCTCATTCCTGGTGGGTGGAGCAATGTGGGGATTTGGATTTTGATATTGGCAACT
TTGCTAATGCAGTATAATTCTACATTTTACCTTGCCAAGTATTCGGAGAAGGTGGTGGTGCCTATTGCTGTTGTGCAATTTGGGCCATATAGGTGGGTCA
GGCACCCGATCTATTCATCCACAATGCTTCTCTTTGCGACTTATTTCCTTGCGCTTCGTGCACCTTTGAGCCTGTTGTTTGTGGTAGCGGTATGTTTGAT
GTATTATGCACAGAAGGCAAAAATGGAGGAGGATCTAATGATTGAGACTTTCGGGGAGAAGTATCTAGAGTACATGGGTAAAGTTCGGTACAAGTTCATT
CCTTTGGTTTATTAA
AA sequence
>Potri.001G242400.4 pacid=42793176 polypeptide=Potri.001G242400.4.p locus=Potri.001G242400 ID=Potri.001G242400.4.v4.1 annot-version=v4.1
METTSVLLHSKTIPFSFTISHNNSRKLSLRHSNKQFQSRLSNNNFLFGQSLKPIKNQAELPFSLYQSTSSLKITRTHLLSPPKCSHSGSASTDGSQNHPF
LKPFKNLSLDELKATLLQLTPIDIIKWSGILSIAIAATKWTVNLVLNPFFWMYFSWTWLFWPWFVAILLAVYGLYCFYKHSIGEASIFEQFAIVTSVFTW
LTLVPPAHFNGYLQGWPFVFFFVYHYFFFFNVSVRKRLYGDYYARPHDPKWDLHPPRWSRLLFCVGVMVGHWLAALEGPELHLIPGGWSNVGIWILILAT
LLMQYNSTFYLAKYSEKVVVPIAVVQFGPYRWVRHPIYSSTMLLFATYFLALRAPLSLLFVVAVCLMYYAQKAKMEEDLMIETFGEKYLEYMGKVRYKFI
PLVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G59500 protein C-terminal S-isoprenyl... Potri.001G242400
[exp]
0 1
AT3G49320 Metal-dependent protein hydrol... Potri.015G007900
[exp]
1.00 0.9319
AT5G07900 Mitochondrial transcription te... Potri.004G013000
[exp]
1.73 0.9211
AT3G10620 ATNUDX26 nudix hydrolase homolog 26 (.1... Potri.008G017900
[exp]
5.29 0.9086
AT1G08640 CJD1 Chloroplast J-like domain 1 (.... Potri.013G046200
[exp]
5.47 0.9249
AT5G55140 ribosomal protein L30 family p... Potri.014G157400
[exp]
7.14 0.8868
AT5G19370 rhodanese-like domain-containi... Potri.009G069300
[exp]
8.12 0.9136
AT3G15000 cobalt ion binding (.1) Potri.001G393400
[exp]
8.94 0.9022
AT5G66631 Tetratricopeptide repeat (TPR)... Potri.005G128600
[exp]
10.34 0.8451
AT4G30930 WRKY32, NFD1 NUCLEAR FUSION DEFECTIVE 1, Ri... Potri.015G095700
[exp]
14.45 0.8840 Pt-RPL21.5
AT4G24175 unknown protein Potri.005G240800
[exp]
15.09 0.9168

Potri.001G242400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.