Plant FIBer expression Database

Potri.001G242900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03910 250 / 9e-77 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G118700
[exp]
250 / 8e-77 AT1G03910 849 / 0.0 unknown protein
Potri.009G034300
[exp]
39 / 0.0006 AT2G29125 64 / 9e-15 DEVIL 13, ROTUNDIFOLIA like 2 (.1)
Potri.001G242800
[exp]
39 / 0.0007 AT2G29125 71 / 4e-17 DEVIL 13, ROTUNDIFOLIA like 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027730
[exp]
238 / 1e-77 ND 328 / 7e-110
Lus10027731
[exp]
248 / 9e-76 AT1G03910 875 / 0.0 unknown protein
Lus10035558
[exp]
245 / 8e-75 AT1G03910 870 / 0.0 unknown protein
Lus10030000
[exp]
237 / 2e-72 AT1G03910 713 / 0.0 unknown protein
Lus10035559
[exp]
216 / 1e-69 ND 301 / 4e-100
Lus10021530
[exp]
192 / 4e-60 AT1G03910 253 / 2e-81 unknown protein
Lus10027605
[exp]
190 / 3e-59 AT1G03910 242 / 4e-77 unknown protein
Lus10035324
[exp]
84 / 5e-20 AT1G03910 116 / 4e-32 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09732 CactinC_cactus Cactus-binding C-terminus of cactin protein
Representative CDS sequence
>Potri.001G242900.2 pacid=42789534 polypeptide=Potri.001G242900.2.p locus=Potri.001G242900 ID=Potri.001G242900.2.v4.1 annot-version=v4.1
ATGGACGTGAACAGGAAGGTAAGTGAAGAAGATATAGAAGAGTATTTGGTGAAGAAGGCGATCAAAAAAGCAAACAAGTTGACGTCGAGATCATCATCAT
CATTCTCGTCCTTTTATTCTAATCAGTCCAATCCCTTTGGTGATTCCAATCTCGATGAGAAATTTGTGTGGCGCAAAAAGATTGAGCGTGATATTGCGCA
AGGGCTGACTTTCTTTTCTCTTAAAACCGAAAGAAGGAGACAGAGAGAGAGAATGGAAGATATTGAAAAGGTTAAGAAAAGAAGAGAGCAAAGGGCATTT
GAGAAACGACAGCACGAGGAAGAAAGGGAGTTGTTAGCTAGAGAACGTGCCCGTGCTGAGTTTCAGGATTGGCAGAAGAAAGAGGATTGTGCTATTCCAC
AATTTGTTGCTAATGATGATGAACGAAAAAATCAGATTCAAGAACCTGTGGAACCAGAACCGCCTACATTATTGGAGAAGTTCAATCTGAATAAAGCTAT
GGGAGCTATGAAGGAAGGTGATGGAGTAATTGGCTCTGTCGCTGAAGTGAACCTGGATTCACAGGTAGAATGGTGGTGTGACAAGTACCAACCGAGAAAG
CCTAAGTATGTCAATACTTTTCACACTGGATATGAATGGAACAAATATAACAGGACTCACTACGATCATGAAAATCCCCCTCCAAAGATTGTGCGAGGAT
ACAAGTTTAATATCTTCTACCCAGACATGATAAACAGGACAGAGACTCCAACTTATACATGCGAGGATGATAGCGAGACTTGCATTATAAGATTTCATGC
AGGACCACCTTATGAGGACATTGCATTCCGAATTGTGAAGAAAGATTGGGATGTGAGCCATAAAAAAGGATTCAAAAGCACGTTTGATGGGGTAATTTTG
CGGCTTCATTTCAACTTCAGACGTCACTCCTATCGCAGAGCTGATTCTAAAAATGGAGGAAAGACAATAAAACTCTATGATACCAATCTCTTCTTGGTCA
GATGGCAGAAAATTTACGAGTTCAATCAAACCCAGCATCCATCTTTAAGAAAGGGGAGGGGAGGAGAAAAAAAAGCAAGAAGAAACAACCAAGAAGGTAC
ACTTGATCCCTTACTCGATCTCTTTGCATGTTCCTTCAAGAATCACCATGTTTGTGCCAACAAACAAGCATGGCAACACAGCGCCTCATGA
AA sequence
>Potri.001G242900.2 pacid=42789534 polypeptide=Potri.001G242900.2.p locus=Potri.001G242900 ID=Potri.001G242900.2.v4.1 annot-version=v4.1
MDVNRKVSEEDIEEYLVKKAIKKANKLTSRSSSSFSSFYSNQSNPFGDSNLDEKFVWRKKIERDIAQGLTFFSLKTERRRQRERMEDIEKVKKRREQRAF
EKRQHEEERELLARERARAEFQDWQKKEDCAIPQFVANDDERKNQIQEPVEPEPPTLLEKFNLNKAMGAMKEGDGVIGSVAEVNLDSQVEWWCDKYQPRK
PKYVNTFHTGYEWNKYNRTHYDHENPPPKIVRGYKFNIFYPDMINRTETPTYTCEDDSETCIIRFHAGPPYEDIAFRIVKKDWDVSHKKGFKSTFDGVIL
RLHFNFRRHSYRRADSKNGGKTIKLYDTNLFLVRWQKIYEFNQTQHPSLRKGRGGEKKARRNNQEGTLDPLLDLFACSFKNHHVCANKQAWQHSAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03910 unknown protein Potri.001G242900
[exp]
0 1
AT4G16265 NRPE9B, NRPD9B,... RNA polymerases M/15 Kd subuni... Potri.010G142500
[exp]
7.48 0.9900
AT1G15140 FAD/NAD(P)-binding oxidoreduct... Potri.008G126700
[exp]
8.36 0.9684
Potri.011G026450
[exp]
11.31 0.9883
AT4G27340 Met-10+ like family protein (.... Potri.001G408950
[exp]
12.08 0.9106
AT5G16460 Putative adipose-regulatory pr... Potri.013G085850
[exp]
12.96 0.9816
AT4G27670 HSP21 heat shock protein 21 (.1) Potri.015G005801
[exp]
14.83 0.9895
Potri.014G065951
[exp]
16.43 0.9894
AT4G26270 PFK3 phosphofructokinase 3 (.1) Potri.018G069200
[exp]
17.32 0.9506
AT1G74875 unknown protein Potri.013G008800
[exp]
24.28 0.9854
AT5G47540 Mo25 family protein (.1) Potri.003G055900
[exp]
25.69 0.9851

Potri.001G242900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.