Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29190 1071 / 0 APUM2 pumilio 2 (.1.2) AT2G29200 1070 / 0 APUM1 pumilio 1 (.1) AT2G29140 1040 / 0 APUM3 pumilio 3 (.1) AT3G10360 584 / 0 APUM4 pumilio 4 (.1) AT3G20250 485 / 7e-155 APUM5 pumilio 5 (.1) AT4G25880 424 / 6e-133 APUM6 pumilio 6 (.1.2.3) AT1G22240 182 / 8e-49 APUM8 pumilio 8 (.1) AT1G78160 171 / 4e-44 APUM7 pumilio 7 (.1) AT4G08840 160 / 3e-41 APUM11 pumilio 11 (.1) AT5G56510 160 / 4e-41 APUM12 pumilio 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034900 [exp] 1717 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.010G201100 [exp] 1073 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 1010 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.008G036500 [exp] 630 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 608 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G004300 [exp] 535 / 1e-173 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.003G009900 [exp] 496 / 9e-159 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.006G165100 [exp] 496 / 1e-158 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 193 / 7e-51 AT5G56510 497 / 4e-168 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040782 [exp] 1273 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10016513 [exp] 1262 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10004976 [exp] 1013 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10001567 [exp] 1005 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 1001 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 736 / 0 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 654 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10000516 [exp] 619 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10033353 [exp] 523 / 7e-170 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10034808 [exp] 515 / 1e-165 AT3G20250 880 / 0.0 pumilio 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat CL0020 [poplar] [flax] PF07990 [poplar] [flax] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Potri.001G243400.2 pacid=42792935 polypeptide=Potri.001G243400.2.p locus=Potri.001G243400 ID=Potri.001G243400.2.v4.1 annot-version=v4.1 ATGCTATCTGAATTGGGAAGGAGACCGATGATAGGAGCTAATGATGGATCATTCGGTGATGATTTAGAGAAGGAGATAGGGTTATTGTTGCGTGAGCAAC GTAGGCAAGAAGCTGATGATCGTGAGAAAGAGCTCAATTTGTATAGGAGTGGTTCTGCTCCTCCAACCGTGGAGGGTTCATTGAATGCAGTCGGGGGCTT GTTTGGCGGCGGAGGTAACGGTGGTGCCTCTTTCTCAGACTTTATTGGTGGAAAAAATGGGAATGGTTTCACGTCCGAGAAGGAGCTTAGGTCTGATCCA GCTTACTTATCTTATTACTATTCAAATGTGAATTTGAACCCTAGGCTTCCTCCTCCTTTGCTGTCGAAGGAGGATTGGAGGTCTGCGCAGAGATTGAAGG GTGGAAGTTCAGTCTTAGGTGGGATTGGAGATAGGAGGAAAGGTAGTAGAGCTGATAGTGGTAATGGTAGATCAATGTTTTCAATGCCGCCAGGGTTTGA ATCGAGGAATCAAGACAGCGAGGTTGAGTCAGAGAAGGTTTCTGGCTCACTTGAATGGGGTGGTGACGGGCTGATTGGTTTACCAGGATTAGGACTTGCC AGCAAACAGAAGAGCTTTGCTGAAATATTTCAGGATGATTTGGGGCGTGCAACTCCTGTGACAGGGCCCCCATCTCGCCCGGCTAGTCGTAATGCATTTA ATGAAAACGTTGAGACCTTAGGTTCAGCTGAAGCGGAGTTGGCTCATTTGCGCCGTGAATTATCATCTGCAGATACTTTACGATCTGGTGCAAATGGCCA GGGCTCCTCTCCTGTCCAAAATATAGGCCAACCTTCTTATAGTTATGCCGCTGCTCTTGGTGCCTCCTTGTCTAGGAGTACTACTCCTGATCCTCAACAC GTTGCCAGGGCCCCTAGTCCATGTCCTACACCCATTGGACAAGGGAGAGTGAGTACATCTGAAAAGAGAGGCACTGCTAGTTCAAACTCATTCATTGGTG TCTCATCTGGTATCAGGGAGCCTTCAGAGTTGGTAGCTGCGTTTTCTGGCATTAACTTGGCAACAAATGGTGGAGTTGATGAAGAAAGCCATTTGCCATC ACAGGCTGAACAGGATGTTGACAGCCATCAGAATTATCTCTTTGGCCTCCAAGGCGGCCAGAATCATCTGAAGCAAAATACATACATAAACAAGTCTGAA TCTGGGCATTTACATATGTCTTCTGTTCCTCAATCTGCCAATTTATCATATTCTGATTTGGCTAGGAGTAATGGTGGTGGATCGAACCTCAACAGCCCAT CCTTGATGGCTGACAGGCAGGTTGAACTACAAAAATTGGCTTTTCCTTCTGGCAATTCTTACATGAAAGGATCACCTACCTCGGCTCTTGGTGGTGGAGG TGGCTTACCTGCACAGTATCAGCATCTAGATGGTATCAATTCATCACTTCCAAACTATGGACTGAGTGGGTATTCCATGAATCCAGCATTGGCTTCCATG ATTGCCCAGCAGCTTGGCACTGGTAATCTGCCACCATTATTTGAAAATGTTGCTGCCGCATCTGCTATGGCCATCCCTGGAATGGACTCAAGAGTGCTCG GAAGTGGTTTGGGGTCTGGAACAAATCTAACTGCTGCTTCGTTGGAGTCTTATAATCTTGGGAGAGGGGGGAGTCCAATAGCAGGTAGTGCTCTTCAGGC ACCTTTTGTTGATCCTATGTATCTCCAGTACTTGAGGACTCCTGACTATGCTGCTACCCAGCTCTCTGCTATTAATGATCCCTCACTAGATAGGAACTAC TTGGGTAATTCATACTTGAATTTCCTTGAAATTCAAAAGGCTTATGGTCTTCTATCATCTCAGAAATCACAGTATGGTGTCCCATTAGGTGGTAAATCTG GCAGTTCTACTCATCATGGTTATTTTGGGAATCCTGCCTTTGGTGTTGGTATGCCATATCCTGGAAGTCCCCTGGCAAGCCCTGTCATTCCAAACTCCCC AGTTGGACCTGCCAGTCCCTTAAGACACAATGAACTGAATATGCGTTTTCCTTCTGGAATGAGGAACTTAGCTGGGGGCATCATGGGACACTGGCCCTTG GATGCAGGATGTAACATGGATGAAAACTATGCGCCATCCCTATTGGAAGAGTTCAAGAGCAATAAAACCAAGTGTCTTGAACTCTCAGAAATTGTTGGTC ATGTTGTTGAGTTCAGTGCGGATCAGTATGGGAGCCGATTCATTCAACAAAAACTTGAGACTGCCACAATGGATGAGAAAAATGTGGTTTATGAGGAAAT CATGCCCCAGGCTCTTCCTCTGATGACTGATGTGTTTGGTAATTATGTAATTCAGAAGTTTTTCGAGCATGGCCTTCCATCACAGAGAAGAGAATTGGCT GGCAATCTTTTTGGTCATGTTTTGACACTTAGTCTTCAAATGTATGGCTGTCGAGTGATCCAGAAGGCCATTGAGGTTGTTGACCTAGACCAGAAAATAA AAATGGTTGAAGAGCTCGATGGTCATGTAATGCGGTGTGTACGTGACCAGAATGGGAACCATGTCATCCAAAAGTGCATCGAGTGTATTCCTGAAGATAA CATTCAGTTTATTGTCTCAACATTCTTTGATCAAGTTGTGAATCTCTCCACCCATCCATATGGGTGTCGTGTGATACAGAGGATATTGGAACACTGCAAG GACGCAAAAACAGAGAGTAAAGTTATGGATGAGATTTTAGGTGCTGTTAGTATGTTGGCGCAAGATCAATATGGAAATTATGTAGTGCAGCATGTGCTGG AACATGGAAAATCTCATGAACGATCTGCTATTATCAAGGAGTTAGCTGGGAAGATTGTTCAGATGAGTCAGCAGAAGTTTGCCTCCAATGTTGTGGAGAA GTGTTTAACTTTTAGTGGTCCTGCTGAACGCCAAATACTGGTCAATGAGATGCTTGGCACTACTGATGAAAATGAGCCTCTTCAGGCAATGATGAAGGAT CAGTTTGCCAACTATGTTGTGCAAAAAGTGCTGGAGACATGTGATGACCAACAGCGTGAGCTGATCCTTACAAGAATAAAAGTCCATTTAAATGCACTGA AGAAGTACACCTATGGAAAGCATATTGTTGCACGTGTAGAGAAACTTGTTGCTGCTGGGGGTAAAAAGGAGAAGTGCTGCACAGTCCCTGCACCCTGCTT AGTTGTGATAGGAAAAAAAGTTGTTTGTACAGCTAACCGAGGCTAG
AA sequence Show only first row Show all	>Potri.001G243400.2 pacid=42792935 polypeptide=Potri.001G243400.2.p locus=Potri.001G243400 ID=Potri.001G243400.2.v4.1 annot-version=v4.1 MLSELGRRPMIGANDGSFGDDLEKEIGLLLREQRRQEADDREKELNLYRSGSAPPTVEGSLNAVGGLFGGGGNGGASFSDFIGGKNGNGFTSEKELRSDP AYLSYYYSNVNLNPRLPPPLLSKEDWRSAQRLKGGSSVLGGIGDRRKGSRADSGNGRSMFSMPPGFESRNQDSEVESEKVSGSLEWGGDGLIGLPGLGLA SKQKSFAEIFQDDLGRATPVTGPPSRPASRNAFNENVETLGSAEAELAHLRRELSSADTLRSGANGQGSSPVQNIGQPSYSYAAALGASLSRSTTPDPQH VARAPSPCPTPIGQGRVSTSEKRGTASSNSFIGVSSGIREPSELVAAFSGINLATNGGVDEESHLPSQAEQDVDSHQNYLFGLQGGQNHLKQNTYINKSE SGHLHMSSVPQSANLSYSDLARSNGGGSNLNSPSLMADRQVELQKLAFPSGNSYMKGSPTSALGGGGGLPAQYQHLDGINSSLPNYGLSGYSMNPALASM IAQQLGTGNLPPLFENVAAASAMAIPGMDSRVLGSGLGSGTNLTAASLESYNLGRGGSPIAGSALQAPFVDPMYLQYLRTPDYAATQLSAINDPSLDRNY LGNSYLNFLEIQKAYGLLSSQKSQYGVPLGGKSGSSTHHGYFGNPAFGVGMPYPGSPLASPVIPNSPVGPASPLRHNELNMRFPSGMRNLAGGIMGHWPL DAGCNMDENYAPSLLEEFKSNKTKCLELSEIVGHVVEFSADQYGSRFIQQKLETATMDEKNVVYEEIMPQALPLMTDVFGNYVIQKFFEHGLPSQRRELA GNLFGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVEELDGHVMRCVRDQNGNHVIQKCIECIPEDNIQFIVSTFFDQVVNLSTHPYGCRVIQRILEHCK DAKTESKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKSHERSAIIKELAGKIVQMSQQKFASNVVEKCLTFSGPAERQILVNEMLGTTDENEPLQAMMKD QFANYVVQKVLETCDDQQRELILTRIKVHLNALKKYTYGKHIVARVEKLVAAGGKKEKCCTVPAPCLVVIGKKVVCTANRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	0	1
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	2.00	0.8741
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	3.16	0.8794
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Potri.010G208400 [exp]	4.24	0.8547
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.007G138700 [exp]	5.65	0.8316
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	7.54	0.8694
					Potri.010G104000 [exp]	7.87	0.8121
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	8.00	0.8583
AT5G27460			Tetratricopeptide repeat (TPR)...		Potri.005G160100 [exp]	8.06	0.8548
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	9.94	0.8505
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	11.40	0.8459

Compare expression of checked genes

Potri.001G243400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.