Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29180 64 / 6e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G034951 [exp] 42 / 1e-05 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040781 [exp] 51 / 4e-08 AT2G29180 83 / 2e-20 unknown protein Lus10016512 [exp] 49 / 2e-07 AT2G29180 82 / 4e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G243500.1 pacid=42789953 polypeptide=Potri.001G243500.1.p locus=Potri.001G243500 ID=Potri.001G243500.1.v4.1 annot-version=v4.1 ATGGCGATAACATCATATCCTATGATCTCACTACCTCCACCACATCTTCTCTCCGTTACCAAGACCAAACCCCCTCACTCTTGTATTCACAACCACAACA AAGCTTTAACTCTCACCTCCCCTCTCTCCTTATCCAATCCTCTACCATCAAAAAGAACTGTTCTTTATAAACAAGAAATTCATCGCAGGAGCACCCAAAT TTGGAAAATTAAAGCAACCCCTGAAGAGGTCTTGCCTTCAGATACAACCCCACTGGAGAGTACCCAGCAGATGTTGTCCACCACTAATGATGATGGAGTT GGCACTATCATATCAGCCCTTCTTTTCGTTGCCTTTGCTGCTCTATCCATTCTCACTATTGGGATAATCTACTTAGGAGTAACAGATTTCTTGCAGAAGA GGGAGACAGATAAGCTTCAGAAGGAAGAGGAATCTAAGAAGAAGAAGAGAGTGAAGAAAAGAAAGGTGAGAGCAAGGTCTGGGCCAAGAGGATTTGGGCA GAAGATCAATGAAGATGATGAATTTGATGATTAG
AA sequence Show only first row Show all	>Potri.001G243500.1 pacid=42789953 polypeptide=Potri.001G243500.1.p locus=Potri.001G243500 ID=Potri.001G243500.1.v4.1 annot-version=v4.1 MAITSYPMISLPPPHLLSVTKTKPPHSCIHNHNKALTLTSPLSLSNPLPSKRTVLYKQEIHRRSTQIWKIKATPEEVLPSDTTPLESTQQMLSTTNDDGV GTIISALLFVAFAALSILTIGIIYLGVTDFLQKRETDKLQKEEESKKKKRVKKRKVRARSGPRGFGQKINEDDEFDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29180			unknown protein		Potri.001G243500 [exp]	0	1
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	4.47	0.9746
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	6.48	0.9690
AT3G56010			unknown protein		Potri.010G186800 [exp]	9.48	0.9665
AT3G26070			Plastid-lipid associated prote...		Potri.001G209600 [exp]	10.95	0.9675
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	13.56	0.9666
AT1G60230			Radical SAM superfamily protei...		Potri.010G040700 [exp]	15.00	0.9626
AT4G25040			Uncharacterised protein family...		Potri.017G062100 [exp]	16.30	0.9511
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	17.14	0.9638	Pt-FFC.2
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	20.39	0.9596	CYP97C4
AT4G37040		MAP1D	methionine aminopeptidase 1D (...		Potri.005G137400 [exp]	20.90	0.9577	MAP1.2

Compare expression of checked genes

Potri.001G243500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.