Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59600 639 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 365 / 2e-116 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 353 / 3e-112 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01030 346 / 4e-110 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 342 / 1e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 340 / 1e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 344 / 3e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 333 / 4e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 332 / 2e-105 MEF22 mitochondrial editing factor 22 (.1) AT4G21300 335 / 7e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216100 [exp] 345 / 9e-112 AT2G37310 724 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 352 / 2e-111 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068900 [exp] 343 / 3e-111 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 345 / 1e-110 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 348 / 2e-110 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G097000 [exp] 350 / 4e-110 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 348 / 6e-110 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G014900 [exp] 339 / 2e-109 AT5G59600 334 / 6e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G005700 [exp] 340 / 6e-109 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016511 [exp] 695 / 0 AT5G59600 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012971 [exp] 360 / 2e-116 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10040917 [exp] 368 / 1e-115 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009813 [exp] 360 / 5e-113 AT4G01030 820 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015225 [exp] 342 / 2e-107 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 340 / 2e-107 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 338 / 1e-106 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 332 / 3e-106 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018492 [exp] 330 / 5e-106 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 335 / 6e-105 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G243800.2 pacid=42792723 polypeptide=Potri.001G243800.2.p locus=Potri.001G243800 ID=Potri.001G243800.2.v4.1 annot-version=v4.1 ATGTGCCTGCTTCTTTCCCGTTACCAATTCAAGGGAACTTTAGCATTTTTTAAATCCCACCATAAGCTTCCCATCCTAATCATATCACGCCGTTCATTTC GATCATCATCGGAAACTTATTTTCATCTCATCGAAACATACGGTCGTGATCGAGCATTACAGCAAGGGAAAAAACTTCATGCTCATCTCATCATTAACGG TTTAGCTCGTTTGACCCATTTTGCCTCCAAACTCATCTCTTTCTATGTAGAAACTAAGCAGTTATCTGACGCTCGCAAGTTGTTCGACAAAATTCCCGAG TCAAATATCCGCCGTTGGATTGTGCTCATTGGGGCCTATTCTCGTCGTGGGCTTATTCAAGAAGCTTTGAGTGTTTTCTATGAAATGCAAAAGCAGGGTT TAGGGGCCAACAAGTTTGTTATTCCTAGCGTACTCAAATGTTGTGGTCATGTGTATGATGTGCAAACTGGGAGGATTTTGCACTCTGTGATTTTGAAGTA TTCGATTGAATCGGATGTTTATGTTATTAGTTCATTGATCGATATGTACTCTAAATGTGGAGAAGTTGAAAAGGCACGGCGAGTGTTTGATAGGATGGTG GAGAAAGACTTGGTGGCTTTGAATGCCATGCTTTCGGGTTATGGTCAACATGGTTTTGCTAAAGAAGGATTTGCTTTGATGGATAAAATGGAAAAATTGG GTATCAAGCCTAATGTAATAACTTGGAATAGCTTGATTTCGGGGTTTGCACAAAAGGGTGATGATGCAATGGTTTCAAAGATGTTTGAATTGATGATCAG CAATGGAGTAGAGCCTGATGTGATTTCTTGGACTTCGGTTATATCAGGGTTGGTGCAAAATTTTCGTAACGAGGCAGCTTTTGATGCATTTAAACAGATG TTGGGCCGGGGATTTCTTCCAACTTCTGCTACAATTAGTACTGTTTTGGCTGCTTGCGCGACCATGGCTAATGTAAGGAGAGGGAGGGAGATACACGGCT ATGCAGTGGTGATTAGAGTTGAAGATGATATATATGTAAGAAGTGCTCTTGTTGACATGTATGCCAAATGTGGTTTTATATCAGAAGCGAGTGTGCTATT TTATATGATGCCTGAGAGGAATACGGTTACTTGGAATTCGATGATTTTTGGGTATGCAAATCATGGCTACTGTGATGAAGCAATTGAGCTTTTTGATCAA ATGGAGAAATCAGAGGGAAATAAGCTCGATCACTTGACTTTCACGGCTGTCCTTACTGCTTGTAGTCATGCTGGAATGGTTGAACATGGACAAAGTTTGT TTCTCTTGATGCAACAGAAGTACAAGATTGTTCCAAGATTAGAGCATTATGCATGCATGGTGGATCTTCTTGGTAGGGCTGGAAATCTTAATGAGGCTTA TGATATGATTAAGAAAATGCCTGTTAAGCCTGATTTATTCGTATGGGGAGCATTATTAGGGGCATGTAGGAATCATGGGGATATAGGTCTTGCTGAGGTA GCAGCTAGGCATTTGGCTGAGCTTGAGCCTGAGAATGCTGGGAATAATATGCTTATGTCAAATTTGTATGCTGATGCTGGTAGCTGGGAAAACGTATCAA GGTCTAAGAAGATGATGAAACGTAAAAGGCTGAAAAACTTTCCGGGGTGCAGTTGGATAGAGGAAGCCACCTGA
AA sequence Show only first row Show all	>Potri.001G243800.2 pacid=42792723 polypeptide=Potri.001G243800.2.p locus=Potri.001G243800 ID=Potri.001G243800.2.v4.1 annot-version=v4.1 MCLLLSRYQFKGTLAFFKSHHKLPILIISRRSFRSSSETYFHLIETYGRDRALQQGKKLHAHLIINGLARLTHFASKLISFYVETKQLSDARKLFDKIPE SNIRRWIVLIGAYSRRGLIQEALSVFYEMQKQGLGANKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVEKARRVFDRMV EKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISGFAQKGDDAMVSKMFELMISNGVEPDVISWTSVISGLVQNFRNEAAFDAFKQM LGRGFLPTSATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVLFYMMPERNTVTWNSMIFGYANHGYCDEAIELFDQ MEKSEGNKLDHLTFTAVLTACSHAGMVEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALLGACRNHGDIGLAEV AARHLAELEPENAGNNMLMSNLYADAGSWENVSRSKKMMKRKRLKNFPGCSWIEEAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G243800 [exp]	0	1
AT1G73090			unknown protein		Potri.010G250100 [exp]	2.82	0.9239
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	4.24	0.9444
AT5G42450			Pentatricopeptide repeat (PPR)...		Potri.006G213200 [exp]	4.69	0.8987
AT5G54180		PTAC15	plastid transcriptionally acti...		Potri.015G005200 [exp]	6.63	0.8911
AT5G17460			unknown protein		Potri.004G091600 [exp]	8.66	0.9056
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	8.83	0.9210
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.003G160100 [exp]	8.83	0.8889
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	11.31	0.9154
AT5G14590			Isocitrate/isopropylmalate deh...		Potri.001G347800 [exp]	11.74	0.8634
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G032600 [exp]	16.37	0.8642

Compare expression of checked genes

Potri.001G243800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.