Plant FIBer expression Database

Potri.001G243900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46750 99 / 2e-22 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G035300
[exp]
331 / 3e-110 AT3G46750 170 / 1e-48 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001565
[exp]
86 / 6e-19 ND /
Lus10004979
[exp]
53 / 4e-07 AT3G46750 57 / 1e-08 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G243900.5 pacid=42791280 polypeptide=Potri.001G243900.5.p locus=Potri.001G243900 ID=Potri.001G243900.5.v4.1 annot-version=v4.1
ATGGCACACTCTCAATCACGTACTGGAGCAATTGCTCCATTTGATGTCAAGCACGGACATGGTAAAAGGCCTGGAAATCCAACAACCCCAACTGTGGAAG
AACTTCTACAAGCTGAGGAAGTTACAAGGTGGTCGCCACACACCACACCAACTTTTTGTAAGGATCATGAGCTGGAGTATGATCAGTCCCCCAATCAAAA
GAAATCAGTTATTACAAAAGTGAAGGAGAAGGCCAGGAAATGGCGAAGCACCCTCAGGAAGAAGAAACATAATGACGACGGTTACACCACTCCTTCATGG
GGTGTCAGCCTGGATTATGTTGAAGATGAAGAAGATCCTGAATATCTAGGAGCCCCAATGTATGAATCAGAGATGGCTCCTGAGGGGTATAAAGAGACCG
CTAGACAACATCCAAGAGCAGTTCCTGTGATATCGGAGACTCATCTTTTGCCAAGTAGTGAGACCTGTGCTGCTGAAGTCAAGCCAATAACTGAAACTGT
GAGCGGGAAACAAGAAAATGAGAAGTCTCCCAAAACACCAACTCAAACCGTGGCAGAGAAGCTGGCACCAGCATGCAACACAGTATCCGTTGCTACCCAT
GCCATTGCTTCCAAGATTCAAAGCCTCGCTGTTTCAACCCCTGAAACTGTGATATCGGAGACGCATGTTTTGCCGAGTAGTGTGACCTGTGCTGCTGAAG
ACAAGCCAATAACTGAAACTGTGAGCGGGAAACAAGAAAATGAAAAGTCTCCTAAAACACTAACTGAAACTGTGGCAGAGAAGCTGGCACCAGCATACAA
CACAGTATCCATTGCTACCCATGCCATTTCTTCCAAGATTCAAAGCCTCGCTATTTCAACCCCTGAAGCACCAGGTGCAGCGGGATTAGACCCTGTGGAG
GAAGGTAGAGCAGCATCATCTGTAGCAGGACCAACCAAAGTAGCTCTAGACCAAGTTACATCAGATCCATCCCGAGATCCAGTAGCTGCAGCATCTGGTT
ACCATTTCTGTGCCGGAGAGAAAAAATGGGATAAAGGAGTTTCAATGAAGGAGTATTTAATGCACATGTCTGGGCCAGGAGAAGATGATAGAGCCCTTTC
TCAAGTGACATTACAAGCAACAAGTCCAAGGAAAACTGCTGGCGATGTGAGTGTGGTGGACAAGGTGAGAGATGCTGTAAATTCTCTTCTTCAGGTCCAG
GAGTCCTCCCAACCTACAGTTTTCCATTCAGCTAAGAACTCATCCTCAGATATTACCATATCAACCGATGCTCATGAAGTTACCGAAGAAGAAAATCATG
GAAGAATACATAAAGCCAACTGA
AA sequence
>Potri.001G243900.5 pacid=42791280 polypeptide=Potri.001G243900.5.p locus=Potri.001G243900 ID=Potri.001G243900.5.v4.1 annot-version=v4.1
MAHSQSRTGAIAPFDVKHGHGKRPGNPTTPTVEELLQAEEVTRWSPHTTPTFCKDHELEYDQSPNQKKSVITKVKEKARKWRSTLRKKKHNDDGYTTPSW
GVSLDYVEDEEDPEYLGAPMYESEMAPEGYKETARQHPRAVPVISETHLLPSSETCAAEVKPITETVSGKQENEKSPKTPTQTVAEKLAPACNTVSVATH
AIASKIQSLAVSTPETVISETHVLPSSVTCAAEDKPITETVSGKQENEKSPKTLTETVAEKLAPAYNTVSIATHAISSKIQSLAISTPEAPGAAGLDPVE
EGRAASSVAGPTKVALDQVTSDPSRDPVAAASGYHFCAGEKKWDKGVSMKEYLMHMSGPGEDDRALSQVTLQATSPRKTAGDVSVVDKVRDAVNSLLQVQ
ESSQPTVFHSAKNSSSDITISTDAHEVTEEENHGRIHKAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G46750 unknown protein Potri.001G243900
[exp]
0 1
AT4G10120 ATSPS4F Sucrose-phosphate synthase fam... Potri.013G095500
[exp]
2.23 0.9637
AT3G06080 TBL10 TRICHOME BIREFRINGENCE-LIKE 10... Potri.002G054400
[exp]
2.82 0.9545
AT5G24120 ATSIG5, SIG5, S... SIGMA FACTOR 5, sigma factor E... Potri.012G031100
[exp]
6.16 0.9559 Pt-SIGE.3
AT5G57180 CIA2 chloroplast import apparatus 2... Potri.006G075200
[exp]
6.32 0.9499
AT5G42760 Leucine carboxyl methyltransfe... Potri.002G260300
[exp]
7.93 0.9551
AT1G60470 ATGOLS4 galactinol synthase 4 (.1) Potri.010G042000
[exp]
8.83 0.9521
AT5G13770 Pentatricopeptide repeat (PPR-... Potri.008G142900
[exp]
9.48 0.9533
AT1G07010 AtSLP1 Shewenella-like protein phosph... Potri.009G077900
[exp]
12.12 0.9509
AT4G34740 CIA1, ATASE2, A... CHLOROPLAST IMPORT APPARATUS 1... Potri.009G125600
[exp]
14.07 0.9490
AT4G17090 CT-BMY, BMY8, B... BETA-AMYLASE 8, BETA-AMYLASE 3... Potri.003G085500
[exp]
14.49 0.9480 Pt-BMY.2

Potri.001G243900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.