Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59250 598 / 0 Major facilitator superfamily protein (.1) AT5G17010 426 / 3e-144 Major facilitator superfamily protein (.1.2.3.4) AT3G03090 402 / 3e-135 ATVGT1 vacuolar glucose transporter 1 (.1) AT2G20780 130 / 4e-32 AtPLT4 Major facilitator superfamily protein (.1) AT5G27360 127 / 2e-31 SFP2 Major facilitator superfamily protein (.1) AT2G43330 121 / 2e-29 ATINT1 inositol transporter 1 (.1) AT4G36670 120 / 8e-29 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT5G27350 119 / 9e-29 SFP1 Major facilitator superfamily protein (.1) AT2G16120 119 / 1e-28 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT3G05165 117 / 4e-28 Major facilitator superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G055600 [exp] 436 / 4e-148 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Potri.006G158700 [exp] 136 / 2e-34 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.017G032200 [exp] 129 / 5e-32 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.013G135200 [exp] 128 / 1e-31 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.002G212900 [exp] 125 / 2e-30 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G113600 [exp] 123 / 1e-29 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 121 / 4e-29 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G152300 [exp] 120 / 6e-29 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G126800 [exp] 120 / 7e-29 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016505 [exp] 568 / 0 AT5G59250 758 / 0.0 Major facilitator superfamily protein (.1) Lus10009573 [exp] 387 / 1e-127 AT5G17010 691 / 0.0 Major facilitator superfamily protein (.1.2.3.4) Lus10040772 [exp] 331 / 8e-111 AT5G59250 387 / 4e-133 Major facilitator superfamily protein (.1) Lus10023640 [exp] 144 / 5e-37 AT3G18830 516 / 7e-180 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10033702 [exp] 131 / 2e-32 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10025565 [exp] 130 / 3e-32 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10018581 [exp] 129 / 1e-31 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10040482 [exp] 128 / 2e-31 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10031637 [exp] 128 / 3e-31 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10011288 [exp] 127 / 3e-31 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G244100.7 pacid=42790440 polypeptide=Potri.001G244100.7.p locus=Potri.001G244100 ID=Potri.001G244100.7.v4.1 annot-version=v4.1 ATGGCTTACAGCGCCATAACCTCACCACCTCCCTTACGATTTCACTCTCCCTTTCACCACCAACCACCCAAACCCAGACCACACTCTCTCGTCTTCTGCT CGTTTGGTGACCAGAAGAACCCAACATCAAAAACTTCATGCCTTTTCAAACCCAACAAGAATATTCCCTTTTTTTCACACCAGCCTTTGCTCTCTGCTCC CAAACTGAGATTCAATGTTCAGTATTCTGCTGGAGAGGAAGCAGAGCCGCTTGTAACTGACGCCACAAATCAGGAAGACTTTTCTTGGTCTTCTGTCATT TTACCATTTTTCTTCCCAGCACTGGGAGGATTGCTATTTGGGTATGACATTGGGGCCACTTCTGGTGCTACCCTATCCTTGCAGTCAGCTGAGCTTAGCG GGATATCATGGTTCAACCTTTCTGCTGTTCAGCTTGGTCTTGTGGTTAGTGGTTCTCTTTATGGAGCTCTTCTTGGTTCCCTCCTTGTCTATCCAATTGC AGATTTTCTGGGAAGGAGGCGGGAACTAATCGCAGCAGCATTGTTATATCTGTTTGGTGGTCTGGTCACTGGCTATGCACCAGGTCTCAATGTTCTTTTA TTAGGACGTCTTCTCTATGGTCTTGGTATTGGCTTGGCCATGCATGGTGCTCCTCTCTATATTGCAGAAACTTGCCCATCACAGATTCGTGGAACTCTCA TATCTCTGAAGGAACTCTTCATAGTTCTAGGAATTCTGATGGGCTTTTTAGTTGGAAGCATCCAAATTAATGCAGTTGGGGGCTGGCGTTACATGTATGG ATTTGGTGTCCCAATTTCTTTGCTTATGGGATTAGGCATGTGGAGTCTCCCACCATCTCCGAGATGGTTGCTCCTCAGAGCAGTTCAAGGTAAAGGATCT TTCCAGGAATATAAAGAGAAGGCCATTTCTGCCTTGAGCAAACTTAGGGGCCGGCCTCCTGGTGACAAAGTGTCTGAGAAACAAATAGAGGAATCTCTTG TCTCACTGAAGTCTGCATATAAAGAAGATGAAACTGAGGGGAGTTTCTTGGAGGTGTTTCAAGGACCGAGTTTGAAAGCATTCGTTATTGGTGGGGGTTT GGTGCTTTTCCAACAGATAACCGGGCAACCAAGTGTTTTATATTACGCAGGTCCAATACTTCAGAGTGCTGGATTCTCTGCAGCTGCTGATGCGACGAGA GTCTCTGTTGTAATTGGTTTGTTCAAGTTGGCAATGACATGGATAGCTGTCCTAAAAGTTGATGATCTTGGAAGAAGACCATTGCTAATTGGAGGTGTCA GTGGGATTGCTCTTTCCTTGTTTTTGCTTTCTGCTTATTACAAATTTCTTGGAGGTTTCCCTCTTGTTGCTGTTGCAGCTCTGCTTCTATATGTCGGTTG CTACCAGATATCATTTGGGCCTATTAGTTGGCTGATGGTTTCAGAGATTTTCCCACTTCGCACCAGAGGAAGGGGAATCAGTCTTGCAGTTCTGACTAAC TTCGGCTCCAATGCCATTGTAACCTTCGCATTCTCACCATTGAAGGAGCTGCTTGGAGCTGAGAACCTTTTTCTCCTTTTCGGGGCTATAGCTTTGTTGT CTCTCTTGTTTGTAGTGGTCATCGTCCCAGAGACTAAAGGTTTGAGTTTGGAAGAAATTGAATCCAAAATCTTAAAGTAA
AA sequence Show only first row Show all	>Potri.001G244100.7 pacid=42790440 polypeptide=Potri.001G244100.7.p locus=Potri.001G244100 ID=Potri.001G244100.7.v4.1 annot-version=v4.1 MAYSAITSPPPLRFHSPFHHQPPKPRPHSLVFCSFGDQKNPTSKTSCLFKPNKNIPFFSHQPLLSAPKLRFNVQYSAGEEAEPLVTDATNQEDFSWSSVI LPFFFPALGGLLFGYDIGATSGATLSLQSAELSGISWFNLSAVQLGLVVSGSLYGALLGSLLVYPIADFLGRRRELIAAALLYLFGGLVTGYAPGLNVLL LGRLLYGLGIGLAMHGAPLYIAETCPSQIRGTLISLKELFIVLGILMGFLVGSIQINAVGGWRYMYGFGVPISLLMGLGMWSLPPSPRWLLLRAVQGKGS FQEYKEKAISALSKLRGRPPGDKVSEKQIEESLVSLKSAYKEDETEGSFLEVFQGPSLKAFVIGGGLVLFQQITGQPSVLYYAGPILQSAGFSAAADATR VSVVIGLFKLAMTWIAVLKVDDLGRRPLLIGGVSGIALSLFLLSAYYKFLGGFPLVAVAALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTN FGSNAIVTFAFSPLKELLGAENLFLLFGAIALLSLLFVVVIVPETKGLSLEEIESKILK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59250			Major facilitator superfamily ...		Potri.001G244100 [exp]	0	1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	2.64	0.8985
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Potri.014G135200 [exp]	6.70	0.8775	Pt-DEGP2.2
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.005G095800 [exp]	7.00	0.8660
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	8.71	0.8329
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	10.09	0.8887	Pt-ANL2.1
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030451 [exp]	18.81	0.7963
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	22.47	0.8732
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	24.08	0.8447	Pt-COL1.1
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	26.15	0.8449
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.010G029700 [exp]	26.83	0.8094	Pt-ATMPK16.1

Compare expression of checked genes

Potri.001G244100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.