Plant FIBer expression Database

Potri.001G244204 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G07470 345 / 1e-116 Transcription factor IIA, alpha/beta subunit (.1)
AT1G07480 342 / 3e-115 Transcription factor IIA, alpha/beta subunit (.1.2)
AT5G59230 71 / 4e-14 transcription factor-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G036700
[exp]
578 / 0 AT1G07470 358 / 1e-121 Transcription factor IIA, alpha/beta subunit (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016503
[exp]
395 / 4e-135 AT1G07470 349 / 1e-117 Transcription factor IIA, alpha/beta subunit (.1)
Lus10040769
[exp]
382 / 3e-131 AT1G07470 354 / 7e-121 Transcription factor IIA, alpha/beta subunit (.1)
Lus10001563
[exp]
268 / 3e-87 AT1G07480 255 / 9e-83 Transcription factor IIA, alpha/beta subunit (.1.2)
Lus10004981
[exp]
195 / 3e-59 AT1G07480 193 / 4e-59 Transcription factor IIA, alpha/beta subunit (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03153 TFIIA Transcription factor IIA, alpha/beta subunit
Representative CDS sequence
>Potri.001G244204.1 pacid=42790101 polypeptide=Potri.001G244204.1.p locus=Potri.001G244204 ID=Potri.001G244204.1.v4.1 annot-version=v4.1
ATGGCGTCATCGGCAACAAGCACCGTTTACACCGAAGTTATAGAAGACGTCATCGACAAGGTCCGCGATGAGTTCATCAATAACGGTGGCCCCGGAGAGA
CTGTCCTTAGTGAGCTCCAAGGACTTTGGGAGAAGAAATTGATGCAAGCGGGTGTTTTATCGGGTCCAATAGTGAGGTCATCAGCTAATAAGCAACTGGT
GCCTGGTGGTCTTACTCCAGTCCACGATCTTAATGTACCGTATGAAGGGACTGAGGAATATGAGACTCCCACTGCTGAGATACTCTTCCCTCCTACACCT
TTGCAAACCCCCATGCAGACACCATTGCCAGGAAGTGCACAAACACCTTTACCTGGGAATGTGCAAACACCTTTACCTGGGAATGTGCCGACACCTTTAC
CTGGTAGTGTGGACAATTCATCCATGTATAACATTTCTACTGGATCTAGTAGTGATTATCCCACCCCTGTTAGCGATGCTGGGGGCAGTACTGATGTAAA
AGCTGGGAGACCCAGCCATTTCATGCAATCTCCTTCCCCTTTGATGCATCAAAGGCCACCTCTTGATGTCAATGTTGCTTATGTGGAAGGGCGGGATGAG
GTGGACAGAGGAGGCTCTCATCAAACCTTGACACAGGACTTCTTCATGTCTTCTGGAAAACGGAAGCGCGGGGATTTTGCTCCAAAATATAACAATGGTG
GATTCATACCCCAGCAAGATGGAGCTGTGGATTCTGCATCTGAGGTTTCACAGGTAAGCCAAGGGAACAATCCCCATGGCAGATGTGACACTATCACAAC
TAAAAATAGAGAGATCTTAGCACGTGTGTCGAGGTCATATGTGAAGATTCCTCAAGTGGATGGGCCAATTCCTGATCCTTATGATGACATGCTTTCAACT
CCCAATATATACAATTATCAAGGAGTTGCTAATGAAGATTACAATATCGCAAACACACCAGCTCCCAATGATTTACAGGCAAGTACCCCAGCTGTTGTCA
GTCAAAATGATGATGTAGATGATGACGATGATGAACCACTGAATGAAGATGACGACGACGATGAGGATCTGGATGGTGTGGACCAAGGAGAGGAGCTGAA
CACACAGCATTTGATTTTAGCTCAATTTGACAAGGTGACTCGTACCAAGAGCAGGTGGAAATGCACACTCAAGGATGGCGTTATGCATATAAACAACAGG
GACATTCTCTTTAACAAGGCAACAGGGGAATTTGAGTTCTGA
AA sequence
>Potri.001G244204.1 pacid=42790101 polypeptide=Potri.001G244204.1.p locus=Potri.001G244204 ID=Potri.001G244204.1.v4.1 annot-version=v4.1
MASSATSTVYTEVIEDVIDKVRDEFINNGGPGETVLSELQGLWEKKLMQAGVLSGPIVRSSANKQLVPGGLTPVHDLNVPYEGTEEYETPTAEILFPPTP
LQTPMQTPLPGSAQTPLPGNVQTPLPGNVPTPLPGSVDNSSMYNISTGSSSDYPTPVSDAGGSTDVKAGRPSHFMQSPSPLMHQRPPLDVNVAYVEGRDE
VDRGGSHQTLTQDFFMSSGKRKRGDFAPKYNNGGFIPQQDGAVDSASEVSQVSQGNNPHGRCDTITTKNREILARVSRSYVKIPQVDGPIPDPYDDMLST
PNIYNYQGVANEDYNIANTPAPNDLQASTPAVVSQNDDVDDDDDEPLNEDDDDDEDLDGVDQGEELNTQHLILAQFDKVTRTKSRWKCTLKDGVMHINNR
DILFNKATGEFEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G07470 Transcription factor IIA, alph... Potri.001G244204
[exp]
0 1
AT3G57990 unknown protein Potri.016G046900
[exp]
5.74 0.8787
AT3G56850 bZIP DPBF3, AREB3 ABA-responsive element binding... Potri.010G248300
[exp]
10.29 0.7927 EEL.2
AT1G07310 Calcium-dependent lipid-bindin... Potri.009G043300
[exp]
10.67 0.8523
AT5G51280 DEAD-box protein abstrakt, put... Potri.004G224000
[exp]
12.32 0.8575
AT3G18770 Autophagy-related protein 13 (... Potri.001G309800
[exp]
17.74 0.8611
AT5G52660 MYB Homeodomain-like superfamily p... Potri.004G073300
[exp]
18.70 0.8536
AT5G24470 APRR5 pseudo-response regulator 5 (.... Potri.015G002300
[exp]
24.00 0.8388 APRR5.3,PtpRR3
AT2G41870 Remorin family protein (.1) Potri.014G058900
[exp]
27.56 0.8303
AT3G01990 ACR6 ACT domain repeat 6 (.1) Potri.001G327000
[exp]
29.83 0.8427
AT4G27540 PRA1.H prenylated RAB acceptor 1.H (.... Potri.011G116200
[exp]
31.85 0.8512

Potri.001G244204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.