Plant FIBer expression Database

Potri.001G244600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29210 252 / 2e-71 splicing factor PWI domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G036900
[exp]
409 / 1e-129 AT2G29210 263 / 6e-75 splicing factor PWI domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001561
[exp]
290 / 1e-85 AT2G29210 263 / 1e-75 splicing factor PWI domain-containing protein (.1)
Lus10004983
[exp]
264 / 3e-76 AT2G29210 252 / 5e-72 splicing factor PWI domain-containing protein (.1)
Lus10030623
[exp]
46 / 0.0001 AT1G60200 558 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1)
Lus10029161
[exp]
45 / 0.0002 AT1G60200 566 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1)
Lus10013003
[exp]
45 / 0.0003 AT1G60200 638 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01480 PWI PWI domain
Representative CDS sequence
>Potri.001G244600.3 pacid=42793319 polypeptide=Potri.001G244600.3.p locus=Potri.001G244600 ID=Potri.001G244600.3.v4.1 annot-version=v4.1
ATGTCGGGCGGGTTTTTCAGGGGCACTTCTGCTGATCAGGACACTCGGTTCTCCAACAAGCAAGCGAAGCTATTGAAATCACAGAAGTTCGCTCCTGAAC
TGGACCATCTGGTTAACACCAAGAAAGTGAAGATGGATGTTATTAAACCATGGATTGCTAATAGAGTGACGGAGCTTCTAGGGTTTGAAGATGAAGTCCT
TATCAACTTTATTTACGGTTTGCTCGATGGAAAGGAAGTGAATGGGAAGGAAGTTCAAATATCGCTGACAGGATTCATGGAGAAAAACACTGGGAAGTTT
ATGAAAGAGCTTTGGACACTTCTTCTTAGTGCGGGGAAGAATGAAAGCGGCGTTCCTCAACAGTTTTTGGATGCCAAAGAAGAAGAAACACGGAAGAAGC
AGGCAGAGGTGGATAGGATAGCAAATGAAATCCAAAAGAAGAAAGAGAAAGAGGAGGAGAGTAGAGAACTTGAGAGGGAAAGATCAAAGAAGATGGACGA
TGAGGTTGAAAAGAAAGCCAATAATGCTATGGAGCCAGCTTCAAAGCATATGCTGCCTAAGGGTTCGAGTGGCCGTGCTGAGGATGAAAAAGAAACTGTC
ACAAGGAATGGTGCAAGAGGAAGGAAAGGGTCTTGTCATTCAATTGATCATTCATTTTCATCCCCTATAGGTTCAACTTCTAGGATCAGCAGGTCGGTTT
CAAATTCGAGAAGTCATTCGGGGCATAACTCAAGAAGTGTGTCTAGATCACCTGAAGCTCGAGGACGACGCTCCATGTCTTCTGATAGGGTGTATCGCTC
ACCAAGAAGGCGCTCAATTACACCTCCTCGGAGGAGATCATCATACTCTAAGCATAGGTCTAGATCCCCTTTTAGACGCAGGTCACCATCCCCTATACGA
CGTAGATTGCGTTCTCCCTTTCGACGTAGGTCACCTTCACCCTCACATGATAGGTCACCATCACCTGTTCGACGTCGTAGGTCACCATCACCTGTTCGAC
GCCGCAGATCTCCTTCGCCTATTCGACGCCGCAGATCTCCTTTGCCTATTAGGCGCCGCAGGTCACCTTCCCTTGTGCGCCGCAAATCACCTTCATTTGT
GCGCCGCAGATCACCTTCACCTATACGTCGCAAATCATCCCCTTCCATGCGACGCAAATCACCATCTCCTGTACGTCAAAGGTATCAAAGGTCTCCGTCT
ACTCCTCACCACATGTCTCCTCCCATGCGACACAAGTCATCTGTCATTTCACGCAAGAGATCTCCATCTCCTCTTCATCGCTCTCCTTTGCCTCACGGAT
CAAGCTCTCCATCTCCTGTACAACATAGGTCTCCTTCTTCAGGGAGATCTCCAAAGGAACTCAAGAGATCACCCATGCAGTCCCTTGGAGAAAGAGTCAG
ATCACAACAAACATTGTTGCCTGTTCCGCAACGCTCCTCCAGTTCTTTTAGGTCACAACAAAGAGATCAAAAGGATCAAAAAGATTTACACACTAGATTG
CCACCTTTATCTCCTTCTCCAGAGAGGTCTCCACCAGTTGGAAGGAAGAGGAGTGCCAGCGAAGATAAAAGGTCCCCTAGTCCATATGAGAGTCCTGCCA
GGCAAAGAAGAGAGCGAATCACACATGATGGTAGCTTGAGTCCTTTGCAACAAAGAGTGAGGAAACCACTGAAGGATAGTCCAGAATCTGGCAAAGACCA
TGAAGAAACTGGCTATACTCGGGAGGGCGGGGACTATAATTCTACATCCTCACATAAACGACCTTTGTATCCATCTAACATGGATAAGCAGAGAGACCCC
CCTGTGAAGTTTCACTGCAAGGATGAGCAAGCTCTTGAAAGATTAGCTAGTCATCAGACCACCGATTCCCGAAACTATCCAGATAACATGGACTCAAGGA
AGAAAGACCAGGATATAAAGATTGGGAAGTCTTCTGGGAGAGGTGGTGATCAAGAAACTCTCGAAGCACAAAAGTCTCCATCTTTGTATAAGAACGAGAA
AGACCGCTCACGCTTAAACAATGTTAAGGATAGTGACAAACGCCGGAAATCAGAAACTGTGCCAGTGACAGCTGAAAAAGTGCATCATAGTAATGGCAGT
GGTGCATTGGATTCTGGTTCTGAGGAAAGTGGTAAGCACAGAGGAGAGAAGAGGGAAAAGTCAAAGCATAAGAGGTCACATCGACATGAAGTGGCTTTGG
ATGATGATGGCAGCCATGGTTCTGAAATTGAAGAGAGAAAAGAGACTAAAAGGAGGAGGAAGGAGGAAAAGAAGTTGCGAAAGGAGGAGAAGCGTCGACG
GCATGAAGAGCGACGCCGTAAAAGAGCGGAACGGCATGCGGAGAAGCTAAAATTGAAGGGTCGTGATGATGCTAGCTCTTCTGATGATGAACATGTTGGG
AGGAGGGAGTCTCATCCAAGTGATGATGAAGAGACAGAATCTGATCAGAGAAGACTTGAGATTGAGTTACGGAAGAAGGCTCTTGAATCACTTAAAGCAA
AGAAGGGCACCAGTCACTGA
AA sequence
>Potri.001G244600.3 pacid=42793319 polypeptide=Potri.001G244600.3.p locus=Potri.001G244600 ID=Potri.001G244600.3.v4.1 annot-version=v4.1
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELDHLVNTKKVKMDVIKPWIANRVTELLGFEDEVLINFIYGLLDGKEVNGKEVQISLTGFMEKNTGKF
MKELWTLLLSAGKNESGVPQQFLDAKEEETRKKQAEVDRIANEIQKKKEKEEESRELERERSKKMDDEVEKKANNAMEPASKHMLPKGSSGRAEDEKETV
TRNGARGRKGSCHSIDHSFSSPIGSTSRISRSVSNSRSHSGHNSRSVSRSPEARGRRSMSSDRVYRSPRRRSITPPRRRSSYSKHRSRSPFRRRSPSPIR
RRLRSPFRRRSPSPSHDRSPSPVRRRRSPSPVRRRRSPSPIRRRRSPLPIRRRRSPSLVRRKSPSFVRRRSPSPIRRKSSPSMRRKSPSPVRQRYQRSPS
TPHHMSPPMRHKSSVISRKRSPSPLHRSPLPHGSSSPSPVQHRSPSSGRSPKELKRSPMQSLGERVRSQQTLLPVPQRSSSSFRSQQRDQKDQKDLHTRL
PPLSPSPERSPPVGRKRSASEDKRSPSPYESPARQRRERITHDGSLSPLQQRVRKPLKDSPESGKDHEETGYTREGGDYNSTSSHKRPLYPSNMDKQRDP
PVKFHCKDEQALERLASHQTTDSRNYPDNMDSRKKDQDIKIGKSSGRGGDQETLEAQKSPSLYKNEKDRSRLNNVKDSDKRRKSETVPVTAEKVHHSNGS
GALDSGSEESGKHRGEKREKSKHKRSHRHEVALDDDGSHGSEIEERKETKRRRKEEKKLRKEEKRRRHEERRRKRAERHAEKLKLKGRDDASSSDDEHVG
RRESHPSDDEETESDQRRLEIELRKKALESLKAKKGTSH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G29210 splicing factor PWI domain-con... Potri.001G244600
[exp]
0 1
AT5G39570 unknown protein Potri.017G087200
[exp]
3.16 0.8078
AT5G49960 unknown protein Potri.013G128100
[exp]
4.58 0.8022
AT4G25230 RIN2 RPM1 interacting protein 2 (.1... Potri.003G109400
[exp]
5.47 0.7705
AT1G43620 UGT80B1, TT15 TRANSPARENT TESTA 15, UDP-Glyc... Potri.005G193100
[exp]
13.03 0.7728
AT5G45190 Cyclin family protein (.1.2) Potri.001G081600
[exp]
14.73 0.7685
AT3G50670 U1SNRNP, U1-70K U1 small nuclear ribonucleopro... Potri.005G124300
[exp]
14.83 0.7594
AT1G75080 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Bras... Potri.005G126400
[exp]
17.02 0.7366
AT2G44950 RDO4, HUB1 REDUCED DORMANCY 4, histone mo... Potri.002G141300
[exp]
19.89 0.8018
AT5G62000 ARF ORE14, HSS, ARF... ORESARA 14, HLS1 SUPPRESSOR, A... Potri.012G106100
[exp]
20.39 0.7512 Pt-ARF2.2
AT1G64570 DUO3 DUO POLLEN 3, Homeodomain-like... Potri.011G003500
[exp]
23.87 0.7615

Potri.001G244600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.