Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29150 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 342 / 1e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 340 / 1e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 338 / 6e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 333 / 5e-116 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29290 330 / 1e-114 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G06060 325 / 6e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 325 / 1e-112 TRI tropinone reductase (.1) AT2G29350 324 / 3e-112 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29310 322 / 2e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039500 [exp] 344 / 3e-120 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 343 / 5e-120 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 341 / 4e-119 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 336 / 5e-117 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 332 / 1e-115 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089800 [exp] 332 / 3e-115 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 323 / 8e-111 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 305 / 1e-104 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 276 / 7e-94 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040736 [exp] 351 / 6e-123 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 332 / 2e-115 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10016494 [exp] 332 / 2e-115 AT5G06060 333 / 7e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001560 [exp] 335 / 2e-114 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 326 / 6e-113 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 324 / 4e-112 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 321 / 4e-111 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 314 / 2e-108 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 314 / 3e-108 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 313 / 7e-108 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.001G245000.1 pacid=42790182 polypeptide=Potri.001G245000.1.p locus=Potri.001G245000 ID=Potri.001G245000.1.v4.1 annot-version=v4.1 ATGGCCCAAGCAGATTGCAATTCCAGCAGGGACAATAGATGGCTACTCCACGGAATGACAGCTCTTGTCACCGGTGGAAGTAAGGGACTCGGGCATGCTA TTGTGGAGGAATTGGCAGGGCTAGGTGCCACCATCCATACATGTGCGAGGACTGAGTCTGTGCTCAATGAATGCTTACAGGAATGGAAGATGAAGGGTTT CAAAGTCACGGGTTCGGTTTGCGATGTTTCCTCTAGAACTGAACGAGAGAAGTTAATGAGCACGGTCTCCTCTCAGTTCGATGGGAAACTTAATATCCTT GTCAACAATGTTGGGATACTATATTTTCAGAGGACCATTGACGTCACTCCCGAAGATATCTCACTTTACCTGAGTACCAACTTCGAATCTGCCTACCATC TGTGCCAACTTGCACATCCTCTTTTGAAAAACTCAGGAGCAGGAAACATCGTCTTTATGTCTTCTGTTTCTGGTGTGGTATCAGTGAGTGTTAGCCTATA TGGAGCAACTAAAGGAGCAATAAACCAACTTACAAAGAACTTGGCATGCGAGTGGGCAAAAGACAATATAAGGGCCAACTCCGTTGCGCCATGGTTAATC AGAACTCCACTTGTTGAGCGTGATCTGGAGAATGAATTGTTTTTGAAGGCTGTTGAGGCTCGCACTCCAATGGGACGACTTGGAGAGCCGAAGGAAGTGT CTTCTTTGGTGGCATTTCTATGCATGCCTGCAGCCTCTTATATAACAGGACAAGTCATTTGTGTTGATGGAGGATTTACTGTGAATGGTCTCACTGTGTA A
AA sequence Show only first row Show all	>Potri.001G245000.1 pacid=42790182 polypeptide=Potri.001G245000.1.p locus=Potri.001G245000 ID=Potri.001G245000.1.v4.1 annot-version=v4.1 MAQADCNSSRDNRWLLHGMTALVTGGSKGLGHAIVEELAGLGATIHTCARTESVLNECLQEWKMKGFKVTGSVCDVSSRTEREKLMSTVSSQFDGKLNIL VNNVGILYFQRTIDVTPEDISLYLSTNFESAYHLCQLAHPLLKNSGAGNIVFMSSVSGVVSVSVSLYGATKGAINQLTKNLACEWAKDNIRANSVAPWLI RTPLVERDLENELFLKAVEARTPMGRLGEPKEVSSLVAFLCMPAASYITGQVICVDGGFTVNGLTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.001G245000 [exp]	0	1
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Potri.003G011132 [exp]	8.00	0.9550
AT1G25340	MYB	ATMYB116	myb domain protein 116 (.1.2)		Potri.015G046200 [exp]	18.57	0.9520
AT1G66920			Protein kinase superfamily pro...		Potri.012G003000 [exp]	27.60	0.9488
					Potri.008G061600 [exp]	32.24	0.9440
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	33.04	0.9501
AT1G66920			Protein kinase superfamily pro...		Potri.012G002800 [exp]	35.35	0.9493
AT1G66920			Protein kinase superfamily pro...		Potri.012G003200 [exp]	39.03	0.9442
AT2G42350			RING/U-box superfamily protein...		Potri.011G063100 [exp]	39.74	0.9453
AT5G08350			GRAM domain-containing protein...		Potri.004G068000 [exp]	47.25	0.9448
					Potri.001G194100 [exp]	49.83	0.9454

Compare expression of checked genes

Potri.001G245000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.