Plant FIBer expression Database

Potri.001G245500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G59210 525 / 0 myosin heavy chain-related (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016491
[exp]
503 / 4e-177 AT5G59210 518 / 0.0 myosin heavy chain-related (.1.2)
Lus10040740
[exp]
504 / 9e-177 AT5G59210 517 / 0.0 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence
>Potri.001G245500.1 pacid=42788473 polypeptide=Potri.001G245500.1.p locus=Potri.001G245500 ID=Potri.001G245500.1.v4.1 annot-version=v4.1
ATGGAAGCGCTTCACGCATCGCTAGGCCGGCGAACATTAGAAGAGATAAGACAAAAGAGAGCAGCTGAGAGATTAAGCAAAGCTTCATCTGGTCCAGATC
TAACCAAAATTCCAACCCCTAATGATAATGCTGGAATGAGAAAATCTGAGAGCGGAAATCGTCTCTCCGAGACGGATATTGGTGGTTTAGTATCTCAGCT
AAAAGACCTACAGAAAAGGAATGCAGACTTGGAGGAAAGCAACGGCATCTTATCTTTAAAGCTTCAAACCAAGGATGTTGAGAACGAAACGCTTCAGAAG
CGCTTAAATGATCTGGAACAAAATACTGTACCATCTCTAAGAAAAGCACTTAGGGAAGTTGCAATGGAGAAAGATGCAGCTGTTGTTTCACGGGAGGACC
TTTCAGCCCAGCTTCGCACACTTAAGAAACGTCTAAAGGAAGCAGAAGAAGAACAATACAGAGCTGAGGAAGATGCAGCAGTCCTGAGAGCAGAATTAAA
CTCAATGCAGCGACAAGCTATGAGTAATCATCCTGGTGATATAAGCTCTATGAGTGTATCACATGATCAAGTGCAAAGATTGGAAAAGGAATTAGCTGGC
TTAAAGTCTGAATTTCAGCAAGTGTCATTATTGAGGCAACAAGAGCAACAAAGATTAGCAGAGGAGCAATCCCGAACCTCTGCCCTCACGTCTGAAAAGC
AGCAGTTGGTTGAGAAACTTGCAGCTCTATCCAGAACAGTCTCAGAAGAAGCATCACAAAATCTGGTCCCTAAGGCCTTTACAGTGGAAGACAAGGAGAA
ACTTGAGAAGCAGTTGCATGATATGGCTTTAGCAGTTGAGCGATTGGAAAGTAGTAGACAGAAACTTCTAATGGAGATTGATTCCCAATCTTCAGAGATA
GAGAAACTTTTTGAGGAAAACTCCAGCCTCTCATCTTCTTGTCAAGAGGCCACGAGCATAGCAAAACAGTGGGAGAATCAGTTGAAGGACTGCCTTAAGA
AAAATGAAGAGCTTCGTGTAATGCTTGATAAGTTGAGAACAGAACAGGCTAATTTACTGTCAAACGATAGGGAGATCCTGGGAGGCTCAGCAGAAAGGCA
TAGAGATGGGGTAACTGAGACTGGCTCACAAGCACATGCAACTGAAATTCTATCACTCAAGGGCCACCTTGCAAAAGAACAGAGCAGAGCAGAAGCATTA
TCAGCAGAGGTCATGCAGCTATCAGCAGAACTGCAACAAGCCACACAAGCATATAATGGTCTTGCACGCCTCTATAAACCAGTTCTTCGGAACATCGAGA
GCAGCCTCATCAAAATGAAGCAAGATGGCACCGTGATTGTGCAGTGA
AA sequence
>Potri.001G245500.1 pacid=42788473 polypeptide=Potri.001G245500.1.p locus=Potri.001G245500 ID=Potri.001G245500.1.v4.1 annot-version=v4.1
MEALHASLGRRTLEEIRQKRAAERLSKASSGPDLTKIPTPNDNAGMRKSESGNRLSETDIGGLVSQLKDLQKRNADLEESNGILSLKLQTKDVENETLQK
RLNDLEQNTVPSLRKALREVAMEKDAAVVSREDLSAQLRTLKKRLKEAEEEQYRAEEDAAVLRAELNSMQRQAMSNHPGDISSMSVSHDQVQRLEKELAG
LKSEFQQVSLLRQQEQQRLAEEQSRTSALTSEKQQLVEKLAALSRTVSEEASQNLVPKAFTVEDKEKLEKQLHDMALAVERLESSRQKLLMEIDSQSSEI
EKLFEENSSLSSSCQEATSIAKQWENQLKDCLKKNEELRVMLDKLRTEQANLLSNDREILGGSAERHRDGVTETGSQAHATEILSLKGHLAKEQSRAEAL
SAEVMQLSAELQQATQAYNGLARLYKPVLRNIESSLIKMKQDGTVIVQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G59210 myosin heavy chain-related (.1... Potri.001G245500
[exp]
0 1
AT1G51980 Insulinase (Peptidase family M... Potri.008G193200
[exp]
5.29 0.7495
AT1G67060 unknown protein Potri.004G098800
[exp]
6.63 0.7196
AT1G20770 unknown protein Potri.005G253101
[exp]
43.30 0.7065
AT2G26990 COP12, ATCSN2, ... FUSCA 12, CONSTITUTIVE PHOTOMO... Potri.009G020900
[exp]
53.40 0.6742
AT5G53000 TAP46 2A phosphatase associated prot... Potri.015G012200
[exp]
66.30 0.6557
AT3G51460 rhd4 ROOT HAIR DEFECTIVE4, Phosphoi... Potri.005G100500
[exp]
68.22 0.6881
AT2G30395 OFP ATOFP17, OFP17 ovate family protein 17 (.1) Potri.019G128400
[exp]
68.58 0.7077
AT3G05940 Protein of unknown function (D... Potri.005G000600
[exp]
68.88 0.6807
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.010G152600
[exp]
72.69 0.6987 Pt-ARF1.6
AT5G05760 ATSYP31, ATSED5... T-SNARE SED 5, syntaxin of pla... Potri.010G191100
[exp]
124.54 0.6852 Pt-SYP31.1

Potri.001G245500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.