Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29410 336 / 7e-114 ATMTPB1, MTPB1 metal tolerance protein B1 (.1) AT3G58810 282 / 2e-92 ATMTPA2, MTP3, MTPA2, ATMTP3 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) AT3G61940 263 / 1e-85 ATMTPA1, MTPA1 Cation efflux family protein (.1) AT2G46800 173 / 3e-50 ATMTP1, ZAT1, ZAT, ATCDF1 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) AT2G04620 69 / 1e-12 Cation efflux family protein (.1) AT3G12100 58 / 5e-09 Cation efflux family protein (.1.2) AT1G33020 49 / 4e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106200 [exp] 275 / 2e-89 AT2G46800 277 / 4e-90 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.002G180100 [exp] 270 / 7e-88 AT2G46800 502 / 3e-178 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.011G150600 [exp] 167 / 1e-47 AT3G58810 281 / 2e-91 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Potri.001G450900 [exp] 163 / 4e-46 AT2G46800 285 / 3e-92 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Potri.005G110300 [exp] 64 / 7e-11 AT2G04620 483 / 2e-158 Cation efflux family protein (.1) Potri.016G045200 [exp] 53 / 2e-07 AT3G12100 536 / 0.0 Cation efflux family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016487 [exp] 397 / 2e-137 AT2G29410 345 / 8e-117 metal tolerance protein B1 (.1) Lus10040744 [exp] 396 / 4e-137 AT2G29410 344 / 1e-116 metal tolerance protein B1 (.1) Lus10002674 [exp] 272 / 2e-88 AT3G58810 503 / 5e-179 ARABIDOPSIS METAL TOLERANCE PROTEIN 3, metal tolerance protein A2 (.1.2) Lus10012604 [exp] 160 / 4e-45 AT3G61940 500 / 2e-177 Cation efflux family protein (.1) Lus10030192 [exp] 105 / 1e-27 AT2G46800 221 / 1e-72 ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1, A. THALIANA CATION DIFFUSION FACILITATOR 1, zinc transporter of Arabidopsis thaliana (.1.2) Lus10013358 [exp] 69 / 3e-12 AT2G04620 783 / 0.0 Cation efflux family protein (.1) Lus10004102 [exp] 67 / 1e-11 AT2G04620 784 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [poplar] [flax] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Potri.001G245800.1 pacid=42791641 polypeptide=Potri.001G245800.1.p locus=Potri.001G245800 ID=Potri.001G245800.1.v4.1 annot-version=v4.1 ATGGAACATGACGGAGTCTCCATTTTGAGATCAGAAGACCAAAACGATATTGAGATGGCTGCTATTGCATCCGAGGAAAAAGTCATCCTTCCCATTGAAG CACAGCTGACTTCTGTTTGTATCTTCCCCAAACAAGAAAATTTCACTTTGGAATCAGAAGAGAGATCAAAGTCAGCAACGAAACTTTCTGGACTCATAAT CTTTTATTTAATAGTTATGGCAGTAGAAGTTGTTGGTGGAGTGAAAGCCAATAGTCTTGCCGTTATTACAGATGCTGCACATTTGTTGACTGATGTTGCT GGATTCTCTATTTCCCTTTTCGCTGTGTGGGTATCGGGTTGGAAGGCAACATCACACCAGTCTTTTGGATATAGTCGTCTTGAAGTTCTGGGTGCTCTTC TCTCTGTTCAGCTCATATGGCTGATTTCTGGTGTTTTAATTTATGAAGCTATTGATAGAATTCTTCACAAAAATGCAAGGGTGAACGGGGGACTAATGTT TGCAATTGCTTTGTTTGGATTTATCATTAATTTTATCATGGTCATGTGGCTGGGTCATGATCACTCTCACCACGCATGCCATGATCACAATCATGATCAT ACTCACAACCACGAGGGCGAGGACTATTGTGCAACAAATGAAGGGGAGGAGACTAAGCTGGTATCAGGTACTCCAGCAAAGACAAAGATATGGAACATAA ATATCCAAGGGGCTTACGTCCATGTCATGGCTGATCTAATTCAGTCTGTCGGGGTGATGATTGCTGGAGCAATTATATGGGCCAAGCCAGATTGGTTGGT GGTTGATCTTATCTGCACTCTACTCTTCTCTACTTTTGTTCTGTTTACTACTTTACCAATGCTTAGAGATATCTTCTGTATACTAATGGAGAGGACACCA CACGAGATCGATGTTGGCAGGCTGGAGAGTGCTCTGAAGTGTATTGAAGGAGTTCAAGATGTTCATAACCTGCATGTATGGTCCATAACAGCAGGGAAGT TAGTATTGTCTAGCCATGTAATGGCTGAGCCTGGAGCCAGCTCTCCTGAAATCCTTCGTATGATTGGGGAATATTGTGAGAAAATGCACAGAATTCACAA TATAACAATACAAATTGAGTAG
AA sequence Show only first row Show all	>Potri.001G245800.1 pacid=42791641 polypeptide=Potri.001G245800.1.p locus=Potri.001G245800 ID=Potri.001G245800.1.v4.1 annot-version=v4.1 MEHDGVSILRSEDQNDIEMAAIASEEKVILPIEAQLTSVCIFPKQENFTLESEERSKSATKLSGLIIFYLIVMAVEVVGGVKANSLAVITDAAHLLTDVA GFSISLFAVWVSGWKATSHQSFGYSRLEVLGALLSVQLIWLISGVLIYEAIDRILHKNARVNGGLMFAIALFGFIINFIMVMWLGHDHSHHACHDHNHDH THNHEGEDYCATNEGEETKLVSGTPAKTKIWNINIQGAYVHVMADLIQSVGVMIAGAIIWAKPDWLVVDLICTLLFSTFVLFTTLPMLRDIFCILMERTP HEIDVGRLESALKCIEGVQDVHNLHVWSITAGKLVLSSHVMAEPGASSPEILRMIGEYCEKMHRIHNITIQIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Potri.001G245800 [exp]	0	1
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	3.00	0.6889
AT2G33390			unknown protein		Potri.008G170700 [exp]	3.46	0.6308
AT3G08890			Protein of unknown function, D...		Potri.006G104000 [exp]	4.69	0.6789
AT1G48170			unknown protein		Potri.008G099700 [exp]	9.64	0.6714
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.015G031800 [exp]	16.09	0.6189	Pt-NANN.2
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Potri.008G036600 [exp]	24.39	0.6615
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Potri.007G129600 [exp]	32.78	0.5769
AT3G43520			Transmembrane proteins 14C (.1...		Potri.006G217400 [exp]	66.49	0.5343
AT3G49645			unknown protein		Potri.017G091300 [exp]	69.64	0.5470
AT1G55915			zinc ion binding (.1)		Potri.008G009700 [exp]	80.05	0.5726

Compare expression of checked genes

Potri.001G245800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.