Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46660 452 / 7e-157 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G59590 442 / 3e-153 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 429 / 7e-148 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46670 419 / 3e-144 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G46690 401 / 4e-137 UDP-Glycosyltransferase superfamily protein (.1) AT5G38010 399 / 2e-136 UDP-Glycosyltransferase superfamily protein (.1) AT3G46680 397 / 1e-135 UDP-Glycosyltransferase superfamily protein (.1) AT3G11340 396 / 4e-135 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT3G46650 394 / 1e-134 UDP-Glycosyltransferase superfamily protein (.1) AT5G05880 390 / 2e-132 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G195600 [exp] 437 / 5e-151 AT3G55700 515 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195500 [exp] 433 / 2e-149 AT3G11340 483 / 3e-169 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.010G195300 [exp] 432 / 5e-149 AT3G11340 485 / 6e-170 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G039300 [exp] 394 / 7e-134 AT5G59590 347 / 2e-115 UDP-glucosyl transferase 76E2 (.1) Potri.009G039100 [exp] 347 / 3e-111 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.007G095000 [exp] 287 / 4e-92 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073766 [exp] 284 / 5e-91 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 284 / 5e-91 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G313000 [exp] 274 / 4e-87 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016461 [exp] 499 / 3e-175 AT3G11340 381 / 3e-129 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016460 [exp] 477 / 9e-167 AT5G59590 400 / 2e-136 UDP-glucosyl transferase 76E2 (.1) Lus10040725 [exp] 475 / 6e-166 AT5G59590 408 / 9e-140 UDP-glucosyl transferase 76E2 (.1) Lus10040246 [exp] 426 / 2e-146 AT3G11340 488 / 3e-171 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10016459 [exp] 392 / 4e-133 AT5G59590 357 / 3e-119 UDP-glucosyl transferase 76E2 (.1) Lus10004671 [exp] 391 / 8e-133 AT3G55700 450 / 4e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10037268 [exp] 386 / 2e-130 AT3G11340 447 / 1e-154 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10004672 [exp] 370 / 4e-124 AT3G11340 417 / 1e-142 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) Lus10035903 [exp] 275 / 2e-87 AT1G22360 522 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10024584 [exp] 271 / 4e-86 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G245900.1 pacid=42789096 polypeptide=Potri.001G245900.1.p locus=Potri.001G245900 ID=Potri.001G245900.1.v4.1 annot-version=v4.1 ATGGAGGAGCAACCACCGAGACATGGCCGTGTGGTCCTGGTGCCGTGTCCATTCCAAGGCCACTTAAATCCCATGCTTCAGCTTGGCGCCATACTTCACT CCCAGGGCTTCTCCATCACCGTTGTTCACACCAAATTCAACTCACCTAACCCATCCTGCCACCATGAATTCACCTTTCAACCTATACCAGATGGCTTATC CCCCGATGAAATTAGCTCTGGGAATTTAGTAGCTATTTTATTAGCACTTAATTGCAATTGCAAAACACCCTTTCAAGAATGCATGACTAGGATGACTCAG CAGCAGAAGCCAGATGATAAGGTTACCTGCGTCATATACGATGAGGTCATGTACTTCGCTGAAGCTGCTGCCAATCATCTGAAGCTTTCAAGTATTATAT TGTGCACCTCCAGCGTTGCCACTGCTCAGTCTCGTGTTGCCATTCGCCAACTCAAGGAAGAAGGTTGCATCCCTTGGCAAGATTCTATGTCACAGGATCG AGTTCCTAACCTTCATTCTCTTAGGTTCAAGGATTTACCAGTTTCCATATTTGGAGTCCCTGATAATTTCTTGGACATGATATCCCAGATGTACAATGTA AGAACGTCTTCAGCTGTTATATGGAATACCATAGATTGCCTCGAACAATCGTCATTGGAACAGCAGCAACAACGATATTGCCCCATTCCAATCTTTCCAA TAGGCCCTTTGCACAAATTTGCACCAGTCTCTTCTAGTAGTCTACTAAATGAGGATACTAGCTGCATTACTTGGCTTGAAAAGCAGCCTTGTAATTCAGT TCTTTACATAAGCTTGGGAAGCTTAGCTTCCATAGATGAGACAGAGGTAGCAGAAATGGCTTGGGGTCTCGCCAGCAGTTGGCAGCGCTTCTTGTGGGTC GTCAGGCCTGGCTCAATTCCGGGATCAGAATGGATTGAATCGTTGCCAGAGGATTTTAGAGAAATAGTTGGAGAAAGAGGTTGCATTGTGAAATGGGCAC CCCAAAAGGAAGTGTTGGCGCACTCTGCAGTGGGAGGATTTTGGAGCCACTGCGGCTGGAATTCAACCCTGGAGAGTATATCCGAAGGAGTTCCAATGAT ATGCAAACCATGTTTTGGGGACCAAAGAGTGAATGCAAGATATGCTAGTTACGTATGGGGAATAGGCTTGCAACTGGAGAACAAGTTGGAGCGCAAGGAG ATAGAAAGGGCAATAAGAAGGCTGATGGTGGATTCTGAAGGAGAGGAGATGAGGCACAAGGCTAAAAATTTAAAGGAAAAGGTTGAGATTTGTATAAAGG AAGGTGGTTCCTCCTACAATAACTTGAAAATGCTATTAGAGTTCATGTCATATTAG
AA sequence Show only first row Show all	>Potri.001G245900.1 pacid=42789096 polypeptide=Potri.001G245900.1.p locus=Potri.001G245900 ID=Potri.001G245900.1.v4.1 annot-version=v4.1 MEEQPPRHGRVVLVPCPFQGHLNPMLQLGAILHSQGFSITVVHTKFNSPNPSCHHEFTFQPIPDGLSPDEISSGNLVAILLALNCNCKTPFQECMTRMTQ QQKPDDKVTCVIYDEVMYFAEAAANHLKLSSIILCTSSVATAQSRVAIRQLKEEGCIPWQDSMSQDRVPNLHSLRFKDLPVSIFGVPDNFLDMISQMYNV RTSSAVIWNTIDCLEQSSLEQQQQRYCPIPIFPIGPLHKFAPVSSSSLLNEDTSCITWLEKQPCNSVLYISLGSLASIDETEVAEMAWGLASSWQRFLWV VRPGSIPGSEWIESLPEDFREIVGERGCIVKWAPQKEVLAHSAVGGFWSHCGWNSTLESISEGVPMICKPCFGDQRVNARYASYVWGIGLQLENKLERKE IERAIRRLMVDSEGEEMRHKAKNLKEKVEICIKEGGSSYNNLKMLLEFMSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46660		UGT76E12	UDP-glucosyl transferase 76E12...		Potri.001G245900 [exp]	0	1
AT5G65840			Thioredoxin superfamily protei...		Potri.014G012100 [exp]	2.82	0.9785
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Potri.010G110100 [exp]	3.00	0.9754
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Potri.005G193400 [exp]	3.46	0.9777	PtrTrxy1
AT3G15840		PIFI	post-illumination chlorophyll ...		Potri.001G204300 [exp]	6.00	0.9721
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.006G202000 [exp]	10.39	0.9688
AT3G57990			unknown protein		Potri.001G145400 [exp]	12.68	0.9582
AT1G52870			Peroxisomal membrane 22 kDa (M...		Potri.011G123700 [exp]	14.00	0.9670
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	15.32	0.9701
AT1G18060			unknown protein		Potri.012G052300 [exp]	16.43	0.9646
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	18.76	0.9665

Compare expression of checked genes

Potri.001G245900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.