Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59030 134 / 9e-41 COPT1 copper transporter 1 (.1) AT3G46900 119 / 7e-35 COPT2 copper transporter 2 (.1) AT2G26975 118 / 9e-35 Ctr copper transporter family (.1) AT5G59040 114 / 8e-33 COPT3 copper transporter 3 (.1) AT2G37925 95 / 2e-25 COPT4 copper transporter 4 (.1) AT5G20650 54 / 1e-09 COPT5 copper transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038800 [exp] 214 / 4e-72 AT5G59030 148 / 4e-46 copper transporter 1 (.1) Potri.009G038700 [exp] 170 / 5e-55 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093300 [exp] 115 / 3e-33 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.006G093200 [exp] 93 / 1e-24 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.006G140700 [exp] 55 / 5e-10 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.006G219200 [exp] 54 / 2e-09 AT5G20650 140 / 1e-43 copper transporter 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016464 [exp] 153 / 5e-48 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10040726 [exp] 143 / 4e-44 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10021108 [exp] 124 / 9e-37 AT2G37925 120 / 2e-35 copper transporter 4 (.1) Lus10017204 [exp] 98 / 3e-27 AT5G59030 88 / 3e-23 copper transporter 1 (.1) Lus10016462 [exp] 79 / 3e-20 AT5G59030 76 / 3e-19 copper transporter 1 (.1) Lus10021107 [exp] 79 / 3e-19 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10016463 [exp] 77 / 1e-18 AT2G26975 92 / 5e-25 Ctr copper transporter family (.1) Lus10017205 [exp] 73 / 7e-17 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1) Lus10023045 [exp] 70 / 1e-15 AT2G26975 84 / 2e-21 Ctr copper transporter family (.1) Lus10032428 [exp] 65 / 1e-13 AT2G26975 87 / 1e-22 Ctr copper transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [poplar] [flax] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G246000.1 pacid=42789108 polypeptide=Potri.001G246000.1.p locus=Potri.001G246000 ID=Potri.001G246000.1.v4.1 annot-version=v4.1 ATGGATCATGGTCATGATATGCCAGGCACGGGAGGCATGGCTGCACCGCCCCCCATGAACAACACAGGAATGATGCACCACCATAAGATGATGATGATGC ACATGACATTCTTTTGGGGCAAGAGTGCTGAAATTGTCTTCTCGAGCTGGCCTGGAAGCTTTGAGAAGAGACCATACATGTATTTTGTGGCTTTGCTATT TGTGTTTGTGCTTTCGATTCTTGTTGAGTGGCTATCCCATTGCCGATTGATCAAGCCTGGCTCCGGCCCTGTGGCGGCTGGTCTAGTCCAGACTCTGTTG CACGCTTTGCGGGTTGGTGTAGCCTATATGGTGATGTTGGCTGTCATGTCTTTCAATGGTGGCGTGTTCTTGGTTGCCGTGGCTGGACAAACTCTGGGGT TCTTCTTTTTTGGCAGTAGGGTTTTTAAAGAAACACATCCTCCAACAGAAACCTCTGATCTTCCTCCAATGAGTTGTTGA
AA sequence Show only first row Show all	>Potri.001G246000.1 pacid=42789108 polypeptide=Potri.001G246000.1.p locus=Potri.001G246000 ID=Potri.001G246000.1.v4.1 annot-version=v4.1 MDHGHDMPGTGGMAAPPPMNNTGMMHHHKMMMMHMTFFWGKSAEIVFSSWPGSFEKRPYMYFVALLFVFVLSILVEWLSHCRLIKPGSGPVAAGLVQTLL HALRVGVAYMVMLAVMSFNGGVFLVAVAGQTLGFFFFGSRVFKETHPPTETSDLPPMSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59030		COPT1	copper transporter 1 (.1)		Potri.001G246000 [exp]	0	1
AT2G24400			SAUR-like auxin-responsive pro...		Potri.006G278100 [exp]	2.23	0.8428
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Potri.015G110400 [exp]	6.00	0.8460
					Potri.011G041124 [exp]	12.64	0.8054
ATMG01275		ND1, ATMG01275....	NAD\(P\)H DEHYDROGENASE 1, NAD...		Potri.007G061981 [exp]	13.92	0.8560
					Potri.006G126750 [exp]	14.10	0.6805
AT2G07689			NADH-Ubiquinone/plastoquinone ...		Potri.007G062522 [exp]	17.05	0.8551
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086300 [exp]	19.44	0.7182
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.011G077380 [exp]	23.43	0.6884
AT1G04360			RING/U-box superfamily protein...		Potri.008G165900 [exp]	24.18	0.7881
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.001G332300 [exp]	25.09	0.7830

Compare expression of checked genes

Potri.001G246000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.