Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09360 419 / 8e-140 Cyclin/Brf1-like TBP-binding protein (.1) AT2G45100 329 / 2e-105 Cyclin/Brf1-like TBP-binding protein (.1) AT2G01280 280 / 1e-86 MEE65 maternal effect embryo arrest 65, Cyclin/Brf1-like TBP-binding protein (.1) AT1G30455 79 / 3e-16 transcription regulators;translation initiation factors;zinc ion binding;transcription activators (.1) AT3G10330 47 / 3e-05 Cyclin-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039100 [exp] 922 / 0 AT3G09360 412 / 7e-134 Cyclin/Brf1-like TBP-binding protein (.1) Potri.001G082800 [exp] 57 / 6e-09 AT4G19550 65 / 1e-12 zinc ion binding;transcription regulators (.1.2) Potri.016G057100 [exp] 42 / 0.0006 AT3G10330 611 / 0.0 Cyclin-like family protein (.1) Potri.006G048400 [exp] 42 / 0.0007 AT3G10330 605 / 0.0 Cyclin-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038957 [exp] 484 / 2e-165 AT3G09360 348 / 8e-113 Cyclin/Brf1-like TBP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00382 [poplar] [flax] TFIIB Transcription factor TFIIB repeat CL0065 [poplar] [flax] PF07741 [poplar] [flax] BRF1 Brf1-like TBP-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G246100.2 pacid=42791370 polypeptide=Potri.001G246100.2.p locus=Potri.001G246100 ID=Potri.001G246100.2.v4.1 annot-version=v4.1 ATGGTGTTTTGCAGCTCTTGTCGAAAAAGCGTTCCTACAAGTTATGACGAAACTGGCATCGTGTCATGTTGCATCTGTGGGAAAGTTTTGCAGTTCACTA ATTTTTCTACTGAAACCACATTTGTAAAAGACAAGACCGGGCAGAGCCATGCTGGAGGAACATTAATTTGGTCTGTTGAAAGAGAAAATGCTTCTCGAGA GAGGTTGTTTGAGAGAGCACGTGATGACATGCTAAACATAAAAAATGGCTTAGACATGGGTCCACATCTTGCCATAGTTGACCAAGCTATGGTGTATTAT AGAATAGCAGTAGAACGGAATTTCACTAAGGGCCGCAGGACAGATCAAGTACAGGCTGCTTGTCTTTACATTGCATGTCGGGAAAACAGGAAACCGTATC TTCTTATTGATTTTTCTAATTACTTGCAGATAAATATTTATGTACTAGGTGCTGTATTTTTGCAGCTCTGCAAAGTTTTAAATCTTACTGAGCATGCCAT TTGTCAGAAACTTCTCGATCCTTCCATTTTTATACACAAATATACTGCTAGTTTATCAGGAGGAAAAAACAGGGAAATTTCTGATGATGCACTGACCATT ATTGCAAGCATGAATCATCACTGGATGCAGACAGGGAGAAGACCCAGTGCGTTATGGGGTGCAGCATTATATATATCTGCAATTTCACATGGTCTCAACT GTTCCAAATCTGACATTTTAAGGCTGGTGCATGTTTGTGGAAAAACACTGTCAAAGAGATTGATTGAATTCGAGAATACAGAGTCTGGAAGCTTAACGAT TGAGGAACTGAATGCGAAGGCAGAGGAGTTGAAAGAGAGTTCAATGCCACAGAAGTTTTTTGGGGAGCCATCTAGTTCAAAAGAGTTGCTTTGTCAACAT AAGGGTACAAATAAACCTCCTTTTGGATTTGGACTTTGTAAAGATTGCTATGCAATAGTTATAGGATTTGAGGGAGGATCAGATCCTCCAGCTTTCCAGA ATGCTGAGAGGCAAAGAATGAAACTATCATCTGTTACGCATAATCTTTCAAAAGAATCGAACAGCCAATGTGAGAGCAGAGATGAAGAAAGGCCAGTACA GGATCCCAAAAGTGTTGAAGCTTCCATGGGGAATTTAGCCAGTGATCCTGATAAACTGCAAGATGATGGTGTGGGTGATATGAGCTCTAAAGATTTTTAC GAGTCAGATGGCTTTTCTGATATTGATGATGCTGAGGTTGATAGCTACCTTCACAACGAGGAGGAAAAACGTTACAAGAAAATCATTTGGGAAGAAATGA ACCGAGAGTATCTTCAGGAACAGGAGGCCAAAGAAGCAGCCACAGCGACTCATAAGGAAGCTTGGGAGGAGAATTTCAAGAATTGCCCAGAGGACTTGCA GGCAGCAAGGAAGCTTGATGCTGCTGTAAAAGCTGATTTAGCAAAATCTAAAAAGGAAATGCAACAAAAGCGAGCTGCAGAAGCTAGGAACTCAGTTCCT GCTAAATCTGCTGCAGAAGCTGTCCATCGAATGCTGACTAAGAAGAGAATCAGTTCGAAAATCAACTATGATGTATTGGAGAAACTATTTGAGGAACCTG AGGCTAAGGATGCCAAGAGACCGCGAACTGAATCACATCCTGACCCTGTTGAGAAGGTGCTGCATACAGATGGAAAAGATCACAAATTAGAGGATACTAA TGAAAATGATGGTTTGGGGCCACTAGATGAAAATGTGGATGATGCTGTTGGAGAAGCATATGATGATTTTCTTTATGACGAAAATGGTTCTGATGATGAC TATGGTAACAGTTTATGGTAA
AA sequence Show only first row Show all	>Potri.001G246100.2 pacid=42791370 polypeptide=Potri.001G246100.2.p locus=Potri.001G246100 ID=Potri.001G246100.2.v4.1 annot-version=v4.1 MVFCSSCRKSVPTSYDETGIVSCCICGKVLQFTNFSTETTFVKDKTGQSHAGGTLIWSVERENASRERLFERARDDMLNIKNGLDMGPHLAIVDQAMVYY RIAVERNFTKGRRTDQVQAACLYIACRENRKPYLLIDFSNYLQINIYVLGAVFLQLCKVLNLTEHAICQKLLDPSIFIHKYTASLSGGKNREISDDALTI IASMNHHWMQTGRRPSALWGAALYISAISHGLNCSKSDILRLVHVCGKTLSKRLIEFENTESGSLTIEELNAKAEELKESSMPQKFFGEPSSSKELLCQH KGTNKPPFGFGLCKDCYAIVIGFEGGSDPPAFQNAERQRMKLSSVTHNLSKESNSQCESRDEERPVQDPKSVEASMGNLASDPDKLQDDGVGDMSSKDFY ESDGFSDIDDAEVDSYLHNEEEKRYKKIIWEEMNREYLQEQEAKEAATATHKEAWEENFKNCPEDLQAARKLDAAVKADLAKSKKEMQQKRAAEARNSVP AKSAAEAVHRMLTKKRISSKINYDVLEKLFEEPEAKDAKRPRTESHPDPVEKVLHTDGKDHKLEDTNENDGLGPLDENVDDAVGEAYDDFLYDENGSDDD YGNSLW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	0	1
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	1.00	0.8922
AT5G20610			unknown protein		Potri.006G145500 [exp]	2.00	0.8919
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227600 [exp]	3.74	0.8643
AT5G18750			DNAJ heat shock N-terminal dom...		Potri.010G018800 [exp]	4.69	0.8680
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Potri.014G016100 [exp]	5.47	0.8683
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.008G011800 [exp]	6.24	0.8644
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	6.92	0.8800
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	7.74	0.8837
AT3G04980			DNAJ heat shock N-terminal dom...		Potri.013G029500 [exp]	9.21	0.8798
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	10.95	0.8633

Compare expression of checked genes

Potri.001G246100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.