Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59010 868 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT3G54030 781 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G00710 734 / 0 BSK3 BR-signaling kinase 3 (.1) AT1G63500 717 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G41260 703 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT4G35230 644 / 0 BSK1 BR-signaling kinase 1 (.1) AT1G01740 610 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) AT5G46570 599 / 0 BSK2 BR-signaling kinase 2 (.1) AT3G09240 597 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1) AT5G01060 586 / 0 Protein kinase protein with tetratricopeptide repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G039500 [exp] 958 / 0 AT5G59010 857 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Potri.006G093900 [exp] 851 / 0 AT3G54030 844 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.016G105800 [exp] 841 / 0 AT3G54030 835 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.014G082400 [exp] 734 / 0 AT4G00710 826 / 0.0 BR-signaling kinase 3 (.1) Potri.002G158400 [exp] 733 / 0 AT4G00710 820 / 0.0 BR-signaling kinase 3 (.1) Potri.003G126700 [exp] 723 / 0 AT1G63500 805 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.001G104700 [exp] 722 / 0 AT1G63500 791 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Potri.004G182800 [exp] 639 / 0 AT4G35230 899 / 0.0 BR-signaling kinase 1 (.1) Potri.009G142800 [exp] 632 / 0 AT4G35230 890 / 0.0 BR-signaling kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040719 [exp] 879 / 0 AT5G59010 820 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10016454 [exp] 833 / 0 AT5G59010 774 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1.2) Lus10027743 [exp] 807 / 0 AT3G54030 824 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10035550 [exp] 800 / 0 AT3G54030 817 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008530 [exp] 739 / 0 AT1G63500 834 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10008494 [exp] 738 / 0 AT1G63500 831 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10001998 [exp] 719 / 0 AT1G63500 811 / 0.0 Protein kinase protein with tetratricopeptide repeat domain (.1) Lus10030383 [exp] 685 / 0 AT4G00710 770 / 0.0 BR-signaling kinase 3 (.1) Lus10037856 [exp] 685 / 0 AT4G00710 764 / 0.0 BR-signaling kinase 3 (.1) Lus10018849 [exp] 662 / 0 AT4G00710 726 / 0.0 BR-signaling kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G246400.1 pacid=42788675 polypeptide=Potri.001G246400.1.p locus=Potri.001G246400 ID=Potri.001G246400.1.v4.1 annot-version=v4.1 ATGGGAGCTAGGTGCTCCAAATTATCACTCTGTTGGTGGCCTTCCCATCTCAAATCAAATCTCAACTATTCCTCTGATCTTGAGAATGGGGAGTTATTGC CTGGTGGGTTTAGAGAGTACAGTTTGGAGCAGCTAAGAGCTGCCACGTCAGGGTTCAGTTCGGACAACATAGTATCAGAACACGGAGAGAAAGCTCCGAA TGTAGTTTACAGAGGAAAGCTTCAAGAAGATGATCGCTGGATTGCTGTTAAACGCTTTAACAAGTCTGCTTGGCCTGATTCTCGCCAATTCCTTGAGGAG GCTAGAGCAGTGGGGCAGTTAAGGAATGAAAGATTGGCCAATTTGATAGGGTGTTGCTGTGAAGGAGAGGAGAGGTTACTTGTTGCTGAGTTTATGCCTA ATGAGACTCTCTCTAAGCATCTTTTTCATTGGGAGAATCAGCCGATGAAATGGGCTATGAGGTTGAGAGTGGCTCTTTATTTAGCTCAAGCTTTGGAGTA CTGTAGTAGTAAAGGAAGGGCATTGTACCATGACTTTAATGCATATAGAATTTTGTTTGACCAGGATGGTAACCCGAGGCTCTCCTGCTTTGGCCTGATG AAGAACAGTAGAGATGGAAAGAGCTACAGTACAAATTTGGCATTCACCCCTCCCGAGTACTTGAGAACTGGAAGAGTGACACCGGAGAGCGTGGTTTATA GCTTTGGCACCCTATTACTTGATCTTCTCAGTGGAAAACATATCCCTCCAAGCCATGCACTTGACCTTATACGCGGAAAAAATTTTCTGATGCTGATGGA CTCTTGTTTGGAGGGTCATTTTTCAAACGATGATGGAACTGAACTTGTGCGTTTAGCTTCACGTTGCTTACAGTTTGAAGCTCGTGAGAGGCCCAATGCA AAATCTCTTGTCACTGCTCTCACTCCTCTTCTAAAAGATACTCAGGTTCCATCCTATATTTTGATGGGTATTCCACATGGAACTGAATCCCCAAAGCAAA CAATGTCATTGACACCTCTAGGGGAAGCTTGCTCAAGACTGGATCTTACTGCAATACATGAAATGCTGGAAAAGGTGGGATACAATGATGATGAGGGAAT TGCAAATGAGCTTTCCTTCCAAATGTGGACAGATCAGATACAGGAAACGCTGAATTGTAAGAAACGTGGTGATGCTGCTTTTCGAGCTAAAGATTTTAAC GCTGCCATTGATTGTTATACTCAATTTATCGATGGCGGGACCATGGTATCTCCAACTGTATTTGCTAGACGCTGTTTGTGCTACTTGATAAGTGACTTGC CACAACAAGCTCTTGGAGATGCTATGCAAGCTCAAGCAGTTTCTCCCGAGTGGCCCACTGCCTTCTATCTTCAAGCTGCTTCCCTCTTTAGCCTCGGGAT GGACACTGATGCACAGGAAACTCTAAAAGATGGCTCATCTTTAGAAGCTAAAAATCATGGAAACTGA
AA sequence Show only first row Show all	>Potri.001G246400.1 pacid=42788675 polypeptide=Potri.001G246400.1.p locus=Potri.001G246400 ID=Potri.001G246400.1.v4.1 annot-version=v4.1 MGARCSKLSLCWWPSHLKSNLNYSSDLENGELLPGGFREYSLEQLRAATSGFSSDNIVSEHGEKAPNVVYRGKLQEDDRWIAVKRFNKSAWPDSRQFLEE ARAVGQLRNERLANLIGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWAMRLRVALYLAQALEYCSSKGRALYHDFNAYRILFDQDGNPRLSCFGLM KNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSCLEGHFSNDDGTELVRLASRCLQFEARERPNA KSLVTALTPLLKDTQVPSYILMGIPHGTESPKQTMSLTPLGEACSRLDLTAIHEMLEKVGYNDDEGIANELSFQMWTDQIQETLNCKKRGDAAFRAKDFN AAIDCYTQFIDGGTMVSPTVFARRCLCYLISDLPQQALGDAMQAQAVSPEWPTAFYLQAASLFSLGMDTDAQETLKDGSSLEAKNHGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59010			Protein kinase protein with te...		Potri.001G246400 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.010G093400 [exp]	5.38	0.8095	ATHB13.3
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.008G155700 [exp]	6.48	0.7864
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	24.00	0.7707
AT1G66480		PMI2	plastid movement impaired 2 (....		Potri.017G128800 [exp]	25.82	0.7569
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.001G190300 [exp]	28.10	0.7779
AT1G29820			Magnesium transporter CorA-lik...		Potri.001G353000 [exp]	36.27	0.7726
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.003G163600 [exp]	46.43	0.7460
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.016G003700 [exp]	48.21	0.7367
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.006G085900 [exp]	49.12	0.7616	AS1.1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.005G014200 [exp]	49.63	0.7441

Compare expression of checked genes

Potri.001G246400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.