Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATRPC14.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29540 137 / 3e-43 ATRPAC14, ATRPC14 RNApolymerase 14 kDa subunit (.1.2.3) AT3G52090 54 / 2e-10 NRPE11, NRPD11, NRPB11, ATRPB13.6 DNA-directed RNA polymerase, RBP11-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G070900 [exp] 52 / 7e-10 AT3G52090 219 / 2e-75 DNA-directed RNA polymerase, RBP11-like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040717 [exp] 171 / 5e-57 AT2G29540 132 / 3e-41 RNApolymerase 14 kDa subunit (.1.2.3) Lus10016452 [exp] 166 / 1e-54 AT2G29540 131 / 9e-41 RNApolymerase 14 kDa subunit (.1.2.3) Lus10019715 [exp] 55 / 8e-10 AT3G08020 726 / 0.0 PHD finger family protein (.1) Lus10016404 [exp] 55 / 8e-10 AT3G08020 569 / 0.0 PHD finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0509 [poplar] [flax] RBP11-like PF13656 [poplar] [flax] RNA_pol_L_2 RNA polymerase Rpb3/Rpb11 dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G246600.1 pacid=42789304 polypeptide=Potri.001G246600.1.p locus=Potri.001G246600 ID=Potri.001G246600.1.v4.1 annot-version=v4.1 ATGGAGCACGGTTCAGTGAGGGATCCAAGCAGCGCAACCTTCTGTTTTGTAGACGAAGATCATACTCTCGCAAACTCTGTCAGATTCGCCTTGAATCAAG ATCCAAGGGTATCATTCTGTGGATACAGCATTCCTCATCCTTCTGATGCTAAGGTTAATATTCGAGTACAGACTACAGGTGATCCAGCTAGGGAGGTGTT GAAGGATGCATGTCAGAATTTGATGGTGATGTGCCAGCACGTCAGGAGCACTTTGGACAAGGCTGTTGATGATTATAGAAGCAATCCCACAGATATGGAT ACAAAATAA
AA sequence Show only first row Show all	>Potri.001G246600.1 pacid=42789304 polypeptide=Potri.001G246600.1.p locus=Potri.001G246600 ID=Potri.001G246600.1.v4.1 annot-version=v4.1 MEHGSVRDPSSATFCFVDEDHTLANSVRFALNQDPRVSFCGYSIPHPSDAKVNIRVQTTGDPAREVLKDACQNLMVMCQHVRSTLDKAVDDYRSNPTDMD TK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Potri.001G246600 [exp]	0	1	Pt-ATRPC14.1
AT1G76065			LYR family of Fe/S cluster bio...		Potri.014G181400 [exp]	11.83	0.7529
AT4G39520			GTP-binding protein-related (....		Potri.007G080900 [exp]	13.19	0.7050
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.001G400900 [exp]	18.00	0.6537
AT5G45660			unknown protein		Potri.011G076600 [exp]	20.34	0.7203
AT3G56250			unknown protein		Potri.013G083700 [exp]	32.18	0.7112
AT1G12400			Nucleotide excision repair, TF...		Potri.009G138800 [exp]	35.09	0.6733
AT4G21192			Cytochrome c oxidase biogenesi...		Potri.004G227500 [exp]	35.49	0.6921
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Potri.013G011500 [exp]	42.16	0.7033
AT4G18060			SH3 domain-containing protein ...		Potri.011G077500 [exp]	43.72	0.7028
AT4G33140			Haloacid dehalogenase-like hyd...		Potri.006G216500 [exp]	50.19	0.6960

Compare expression of checked genes

Potri.001G246600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.