Plant FIBer expression Database

Potri.001G246800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52370 161 / 1e-51 unknown protein
AT5G58990 155 / 5e-49 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G040100
[exp]
247 / 3e-85 AT5G52370 150 / 4e-47 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016449
[exp]
166 / 6e-53 AT5G52370 169 / 2e-54 unknown protein
Lus10040713
[exp]
165 / 9e-53 AT5G52370 167 / 6e-54 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF16053 MRP-S34 Mitochondrial 28S ribosomal protein S34
Representative CDS sequence
>Potri.001G246800.1 pacid=42792812 polypeptide=Potri.001G246800.1.p locus=Potri.001G246800 ID=Potri.001G246800.1.v4.1 annot-version=v4.1
ATGGGTGGCAGTCTCGTCGCAAAGAGAGCAGCAGTGTCAGCCCCAAACCAAACACTAAGCTTATTCAGATTATCATTCTGCAACTTGCTAAAAACCTTCA
GTACTTCTTCTTCTTCTTCAGCAGCTGCTGAAAACCCTAAAAATGAGACTTCAAAACCGAAGCGAAGAAAGAAGAAGAACCTCTTCGAGGTGGCTCAGTT
TCTGCCTAATTGGGGAATCGGATACCACATGGCTAAATCTCATTGGGCCAATGTATCTTACGAGATCACCAAAATCAATCTCTACAAGGATGGTAGGCAT
GGAAAAGCATGGGGGATAGCTCACAAAGATGGATTACCAATTGCTGATGCTGCTCCCAAGAAGATAAGTGGAGTTCACAAGCGTTGTTGGAAGTACATTC
CCAGCTTGGCAAAATCAATTGAAGGCAAGGCAAGCTCACCAAAATCAACAGAAACTGCTTCAAAAACTGAAGTCCAGGCAGCTTAA
AA sequence
>Potri.001G246800.1 pacid=42792812 polypeptide=Potri.001G246800.1.p locus=Potri.001G246800 ID=Potri.001G246800.1.v4.1 annot-version=v4.1
MGGSLVAKRAAVSAPNQTLSLFRLSFCNLLKTFSTSSSSSAAAENPKNETSKPKRRKKKNLFEVAQFLPNWGIGYHMAKSHWANVSYEITKINLYKDGRH
GKAWGIAHKDGLPIADAAPKKISGVHKRCWKYIPSLAKSIEGKASSPKSTETASKTEVQAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52370 unknown protein Potri.001G246800
[exp]
0 1
AT3G62840 Small nuclear ribonucleoprotei... Potri.014G129100
[exp]
6.48 0.8434
AT1G10840 TIF3H1 translation initiation factor ... Potri.014G147100
[exp]
7.14 0.8429 TIF3.5
AT3G26360 Ribosomal protein S21 family p... Potri.010G048600
[exp]
8.06 0.8421
AT4G23760 Cox19-like CHCH family protein... Potri.003G136500
[exp]
8.71 0.7558
AT4G14110 FUS7, EMB143, C... FUSCA 7, EMBRYO DEFECTIVE 143,... Potri.001G207900
[exp]
8.83 0.7768 EMB143.2
AT5G24510 60S acidic ribosomal protein f... Potri.002G179400
[exp]
9.38 0.8555
AT5G12320 ankyrin repeat family protein ... Potri.001G276100
[exp]
9.53 0.8055
Potri.016G120333
[exp]
10.53 0.7773
AT5G59850 Ribosomal protein S8 family pr... Potri.010G208700
[exp]
10.95 0.8422 Pt-WRP15.1
AT4G37660 Ribosomal protein L12/ ATP-dep... Potri.004G224300
[exp]
11.22 0.7922

Potri.001G246800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.