Plant FIBer expression Database

Potri.001G247000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G247000.1 pacid=42789770 polypeptide=Potri.001G247000.1.p locus=Potri.001G247000 ID=Potri.001G247000.1.v4.1 annot-version=v4.1
ATGGGGATCCCAAGTTGCGCTTGGGGTTATCGTTTATTGCATGTTACGTTTCTTTTTAGTCATTTCTCTATAATCTATCGTGGAATTTTGATTTTAATTT
ATAGAGCTAACCTCGCATCAAGTGTGCTTGTCTCTATGCAAGGAACAGGGGATGGCCTCTTCTCTGGAAAAGAAGCCTCTCGTCGTGGTACTTGTGGTTT
TCTTATATACACACCCTTTTATGGCAAAATGTTGTTAATTTTCCAGTTGTTTTGCGTGGAAAGTGAACCGAAACATGTGAAATCATGTGGAAACTTGGGA
TTGATTAATATTTGTTCTTTCTGGTGGGTTTTTACTTTTCTTTGTTCTGATAGAAGTATTATATTATGGATCCATTTAGTCTAA
AA sequence
>Potri.001G247000.1 pacid=42789770 polypeptide=Potri.001G247000.1.p locus=Potri.001G247000 ID=Potri.001G247000.1.v4.1 annot-version=v4.1
MGIPSCAWGYRLLHVTFLFSHFSIIYRGILILIYRANLASSVLVSMQGTGDGLFSGKEASRRGTCGFLIYTPFYGKMLLIFQLFCVESEPKHVKSCGNLG
LINICSFWWVFTFLCSDRSIILWIHLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G247000
[exp]
0 1
AT3G01435 Expressed protein (.1) Potri.004G001600
[exp]
2.23 0.9095
AT1G66590 ATCOX19-1 A. THALIANA CYTOCHROME C OXIDA... Potri.001G187200
[exp]
7.74 0.8672
AT1G48140 DPMS3 dolichol phosphate mannose syn... Potri.002G245800
[exp]
8.06 0.8752
AT1G15230 unknown protein Potri.003G053500
[exp]
9.11 0.8233
AT5G52545 unknown protein Potri.004G079400
[exp]
9.79 0.8644
AT1G54610 Protein kinase superfamily pro... Potri.007G077600
[exp]
12.24 0.8589
AT2G45880 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7... Potri.001G372500
[exp]
13.78 0.8524
AT1G58210 EMB1674 EMBRYO DEFECTIVE 1674, kinase ... Potri.017G036100
[exp]
15.09 0.8675
AT4G37540 AS2 LBD39 LOB domain-containing protein ... Potri.014G017400
[exp]
19.20 0.8491
AT1G06170 bHLH bHLH149 basic helix-loop-helix (bHLH) ... Potri.009G023800
[exp]
19.89 0.8656

Potri.001G247000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.