Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43240 176 / 6e-49 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) AT5G01120 164 / 1e-44 Protein of unknown function (DUF674) (.1) AT5G01130 160 / 8e-44 Protein of unknown function (DUF674) (.1) AT5G01150 151 / 4e-40 Protein of unknown function (DUF674) (.1) AT3G09140 149 / 2e-39 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) AT5G01140 145 / 5e-38 Protein of unknown function (DUF674) (.1) AT3G09110 141 / 9e-38 Protein of unknown function (DUF674) (.1) AT3G09120 114 / 4e-28 Protein of unknown function (DUF674) (.1) AT5G37320 98 / 8e-22 Protein of unknown function (DUF674) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G247200 [exp] 838 / 0 AT5G01120 189 / 8e-54 Protein of unknown function (DUF674) (.1) Potri.008G050000 [exp] 80 / 6e-17 AT3G09110 94 / 1e-22 Protein of unknown function (DUF674) (.1) Potri.010G210500 [exp] 62 / 5e-11 AT3G09110 73 / 4e-15 Protein of unknown function (DUF674) (.1) Potri.010G210800 [exp] 62 / 7e-11 AT3G09110 86 / 2e-19 Protein of unknown function (DUF674) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003166 [exp] 95 / 8e-22 AT3G09110 104 / 3e-26 Protein of unknown function (DUF674) (.1) Lus10003168 [exp] 82 / 2e-17 AT5G01150 94 / 2e-22 Protein of unknown function (DUF674) (.1) Lus10003164 [exp] 82 / 3e-17 AT5G01130 95 / 6e-23 Protein of unknown function (DUF674) (.1) Lus10011225 [exp] 76 / 3e-15 AT5G01150 89 / 4e-20 Protein of unknown function (DUF674) (.1) Lus10003163 [exp] 69 / 5e-13 AT3G09110 100 / 2e-24 Protein of unknown function (DUF674) (.1) Lus10003167 [exp] 62 / 2e-10 AT3G09140 100 / 5e-25 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) Lus10002340 [exp] 59 / 2e-10 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10002348 [exp] 40 / 0.0009 ND 71 / 1e-15
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05056 [poplar] [flax] DUF674 Protein of unknown function (DUF674)
Representative CDS sequence Show only first row Show all	>Potri.001G247300.4 pacid=42793079 polypeptide=Potri.001G247300.4.p locus=Potri.001G247300 ID=Potri.001G247300.4.v4.1 annot-version=v4.1 ATGGCAACCATTAGCTTGAAGGCATCTGTGGACAAGAAGAGCAACAGAGTTGTATTTGTTGAATCTGACGAGTTCTTTGTTGACATCCTTTTCAGCTTTT TGACAATGCCCATGGGAACAATCATCCATCTCATCAGTAATCTTTCACCGACAAATGGGGTTGTTTGCATGAACAACTTATATAAAAGTGTTGAAAATAT AGATGTTAGGTATTTCCGGACTGAAGCATGCAAGGACATGTTACTACATCCTCGTAATGCCGCTGCAGCTTATTGTAAGAGCCTAAAACTGAAAATTGAT GGCAGTGGTACTTCAAGTGTCTTTTGTTGCGAGAATTCCGAGTGTACTCATTCTGGCTACAAGTTGTGGAGTAATTACAAAAATCTTTATTGTGGTTGTG GACGTCCCATGAGCAGTATTTTGAATCTACCATGCCGGGCTCCATCCAATAGTGGATCTAACAAAAGAAATCAAGGAGTGTTTGTTAAAGAACTGGCCCG ATTTGTTGTTAGTGACTGTTTTCAAGTGATGCCAGCATCAGCTTCAGCAAGCATTTCTCTTCTTACAAAGCTTGGAGTCGTGGATACAAGTAACATCGAG GAGAGGATTTTTGACATTGGATTTACAGAGGTCTTGCAACTGCTGGAGTGCTCATTGGTATCAAGGACACCTCTGACCGAAGTTTTGCTTGCTCGTAAGG AAGTTCCCGAGTTAAGAAATGAAGATTCCCTTCAAAGAATCTCTCTTTTGCGTGAAAAACTAGAGCATCAATCAGAAAGAAATGGTGAGACGTCTGTTAG GCTTGTGGTTTGCAAATCCAAGAAAGTGGTATGTTACGCAGAAGCGTCAAAAGATTTTCTTGATTTACTTTTTAGTTTTCTCACCATTCCACTTGGGTAT TTGATGAATGAAACGCATGGTGGACAGTCAAAAGGATCCATCCACCACCTATATGACAGTGTCATTGATCTCGATGCTAGGAAATACCTGAAGTCAAATG ACATTAAAGAGATTCTTCTAAATCCTAAGATTGCACCTGGTTCTGGCTATAAGAACCAGCCACTAGGTGTTAAGGAAGCTGTTGATAACCAGCAGTACTA CTATGAACGGGGTTCTACTTCCCAATTTTTTATTCAGGGTAAAATAAGAACTGAAAGCAAATGTCCTGGCGGTTCTACACTCCCACTTTTAACTATGATG GATCCCAAATCACCTTACAAAGAGGGCACAGAAGGTGGTGGATTTTTGCTAGATCCTGCAATGTTCACGGTAAGTGACGATCTTGTTGTTACACCAATAT CGCCTGTCTCAGAACTATCTTTACTGGAAAAATTGAAGATACCTTTCAATGACATCTATGACTGCGAGGTTCAAGTTGGCAGAGAAGAGGCTTCCCGTCT CTTAGCAGCTTCTTTTGTATCTGAATCTGCTCTTACTGATACCTTCATACGTAAGATGCCAAAAGATGCCTTAATTTCCGATGTTCTGAAAGAATAA
AA sequence Show only first row Show all	>Potri.001G247300.4 pacid=42793079 polypeptide=Potri.001G247300.4.p locus=Potri.001G247300 ID=Potri.001G247300.4.v4.1 annot-version=v4.1 MATISLKASVDKKSNRVVFVESDEFFVDILFSFLTMPMGTIIHLISNLSPTNGVVCMNNLYKSVENIDVRYFRTEACKDMLLHPRNAAAAYCKSLKLKID GSGTSSVFCCENSECTHSGYKLWSNYKNLYCGCGRPMSSILNLPCRAPSNSGSNKRNQGVFVKELARFVVSDCFQVMPASASASISLLTKLGVVDTSNIE ERIFDIGFTEVLQLLECSLVSRTPLTEVLLARKEVPELRNEDSLQRISLLREKLEHQSERNGETSVRLVVCKSKKVVCYAEASKDFLDLLFSFLTIPLGY LMNETHGGQSKGSIHHLYDSVIDLDARKYLKSNDIKEILLNPKIAPGSGYKNQPLGVKEAVDNQQYYYERGSTSQFFIQGKIRTESKCPGGSTLPLLTMM DPKSPYKEGTEGGGFLLDPAMFTVSDDLVVTPISPVSELSLLEKLKIPFNDIYDCEVQVGREEASRLLAASFVSESALTDTFIRKMPKDALISDVLKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43240			Protein of unknown function (D...		Potri.001G247300 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.017G024300 [exp]	1.73	0.9533
AT2G44930			Plant protein of unknown funct...		Potri.017G024866 [exp]	2.00	0.9276
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	2.44	0.9251	Pt-RCOMT1.3
AT1G58170			Disease resistance-responsive ...		Potri.016G060900 [exp]	6.92	0.9021
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	7.74	0.9072
AT1G53163			unknown protein		Potri.011G116600 [exp]	9.53	0.9052
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.007G146100 [exp]	10.24	0.8938
AT5G45480			Protein of unknown function (D...		Potri.015G113700 [exp]	10.67	0.8963
					Potri.012G109500 [exp]	11.35	0.8700
AT4G05220			Late embryogenesis abundant (L...		Potri.011G027400 [exp]	13.41	0.9193

Compare expression of checked genes

Potri.001G247300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.