Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21280 84 / 1e-18 unknown protein AT1G34070 49 / 2e-06 unknown protein AT5G48050 49 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G127101 [exp] 480 / 3e-172 AT1G21280 75 / 8e-16 unknown protein Potri.013G016350 [exp] 132 / 8e-35 AT1G21280 56 / 2e-08 unknown protein Potri.001G387801 [exp] 59 / 6e-10 ND / Potri.001G150101 [exp] 57 / 2e-09 ND / Potri.004G133001 [exp] 55 / 2e-08 AT1G21280 46 / 6e-06 unknown protein Potri.006G109250 [exp] 52 / 1e-07 AT1G21280 52 / 6e-08 unknown protein Potri.006G249450 [exp] 48 / 1e-06 AT1G21280 45 / 3e-06 unknown protein Potri.013G133550 [exp] 49 / 2e-06 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003998 [exp] 48 / 9e-06 AT4G00980 226 / 9e-68 zinc knuckle (CCHC-type) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0523 [poplar] [flax] GAG-polyprotein PF14244 [poplar] [flax] Retrotran_gag_3 gag-polypeptide of LTR copia-type
Representative CDS sequence Show only first row Show all	>Potri.001G247404.1 pacid=42790873 polypeptide=Potri.001G247404.1.p locus=Potri.001G247404 ID=Potri.001G247404.1.v4.1 annot-version=v4.1 ATGTCTGAAAACACTACAAAAGAAACCCAAATATCAGGGGAATTCCAGAGTTTACAGTCATCCTATAGACTGAATGGAAGAAACTATCTAAAGTGGTCAC AGATAGTAAAAACATTTCTCAAAGGAAAGGGAAAGATTAATCATTTGATGGACAATCCTCCTAGTCCAGAAGACCCAAAGTTTACACTTTGGGATGAAGA AGACTCCATGATTATGTCATGGCTGTGGAACTCTATTATGCCAGAAGTTTGTGGGCCTTATATGTTTCTGGTTACAGCAAAAGACATATGGGATGCAGTG AGACAGATCTACTCTAAAGTGAAGGATGCTGCATTAATCTATGAGATTAAGATGAAGCTTTCAAAGACCAAACAAGGTAATATGATGGTTATTGAATATT ACAATATTATGAAAAGTTTCTGGTTGGAATTGGACTATTATCAGGATTTTAAGATGCAGTGTAGTGAGGATGCTGTGATTTTAAAGAATTATGTAGAAAG AGAAAGGATCTTTGAATTTCTTGCAGGACTCAACATAGAATTTGATCAAATGCGAGTCCAAATACTTGGAAAGGAATCCATGCCCTCACTCAATAAGGTA TTTTCAGTAATAAGGGCTGAAGAAGGAAGGAGAACTGTGATGCTTGAGGTCCCAAATACTGAAGGTTCTGCTATGATGATAACTAATAGCAGACACTTAA GTGATGCTAGTAGAAACCAAAATGATGCCATGAATGGTGCAGAAGTGGTGAAGACTGAAGGAAGAAAATTCTTTAAGGATGATCAGTTTTGTAACTATTG CAAGAAAACAGGCCATACAAAGGAGATCTGCTGGAAACTCCATAGAAAACCACCAAGGATGGGGCGTAATGGAGGACAAAAATGGAACCATTCAAGAGGA CATGCACACTTAACAAATTCAGGAGAGGCAGCACATGAGTCCAGCACCCTAGAGGTGAGAGAATTCAACAAAGAGGAGATTGAACGCTTAAGAACCTTAC TCAACACAATGGAGAAACCATCTGGATCATGCTCTCTTGCTCAAAATGGACCTAGCTACGGGGAGGACGATTGGGCAAGCTAG
AA sequence Show only first row Show all	>Potri.001G247404.1 pacid=42790873 polypeptide=Potri.001G247404.1.p locus=Potri.001G247404 ID=Potri.001G247404.1.v4.1 annot-version=v4.1 MSENTTKETQISGEFQSLQSSYRLNGRNYLKWSQIVKTFLKGKGKINHLMDNPPSPEDPKFTLWDEEDSMIMSWLWNSIMPEVCGPYMFLVTAKDIWDAV RQIYSKVKDAALIYEIKMKLSKTKQGNMMVIEYYNIMKSFWLELDYYQDFKMQCSEDAVILKNYVERERIFEFLAGLNIEFDQMRVQILGKESMPSLNKV FSVIRAEEGRRTVMLEVPNTEGSAMMITNSRHLSDASRNQNDAMNGAEVVKTEGRKFFKDDQFCNYCKKTGHTKEICWKLHRKPPRMGRNGGQKWNHSRG HAHLTNSGEAAHESSTLEVREFNKEEIERLRTLLNTMEKPSGSCSLAQNGPSYGEDDWAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21280			unknown protein		Potri.001G247404 [exp]	0	1
AT3G24255			RNA-directed DNA polymerase (r...		Potri.006G175124 [exp]	1.73	0.9481
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	3.74	0.9257
AT5G42220			Ubiquitin-like superfamily pro...		Potri.002G013500 [exp]	4.24	0.9292
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.005G024600 [exp]	6.63	0.9423
					Potri.008G062800 [exp]	6.92	0.9139
AT1G31240			Bromodomain transcription fact...		Potri.012G119500 [exp]	10.72	0.9358
					Potri.004G011901 [exp]	13.96	0.9011
					Potri.006G175050 [exp]	14.83	0.8994
					Potri.006G043019 [exp]	15.19	0.9025
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.009G154300 [exp]	15.42	0.9157

Compare expression of checked genes

Potri.001G247404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.